Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30041X
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    86   2e-18
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    51   6e-08
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    49   2e-07
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    42   3e-05
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    32   0.038
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    31   0.051
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   0.62 
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   3.3  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   4.4  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   4.4  
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    24   7.7  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    24   7.7  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 85.8 bits (203), Expect = 2e-18
 Identities = 37/40 (92%), Positives = 40/40 (100%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGPGIV+RKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 51.2 bits (117), Expect = 6e-08
 Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 3/41 (7%)
 Frame = -1

Query: 399 YSVWIGGSILASLSTFQQMWISKEEYNESGP---GIVHRKC 286
           Y+ W+GGSIL+SL TF Q+WIS++EY E G     ++ ++C
Sbjct: 392 YASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 49.2 bits (112), Expect = 2e-07
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = -1

Query: 396 SVWIGGSILASLSTFQQMWISKEEYNESG 310
           +VW GGSILASL  FQ +W+SK+EY+E G
Sbjct: 390 AVWFGGSILASLDNFQHLWVSKQEYDEVG 418


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 18/39 (46%), Positives = 30/39 (76%)
 Frame = -1

Query: 399 YSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           ++ W+GGSILASLSTF+++ I+ EEY ++   ++ R+ F
Sbjct: 342 HNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 31.9 bits (69), Expect = 0.038
 Identities = 13/32 (40%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = -1

Query: 402 KYSVWIGGSILASL-STFQQMWISKEEYNESG 310
           +++V+IGG++LA + +    MW+SK E+ E G
Sbjct: 347 RHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 31.5 bits (68), Expect = 0.051
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 396 SVWIGGSILASLSTFQQMWISKEEYNESGPGIVHR 292
           +VW GGS+LA    F     +K +Y E G  I  R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = -1

Query: 390 WIGGSILASLSTFQQM---WISKEEYNESGPGIVHRK 289
           ++GGSI+A  S  + +   +++ EEY + GP  +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 227 ELGRAQHHTAPGSRGRAA*KHLRWT 301
           E+ R++ H+ PGS+G A   +L WT
Sbjct: 46  EISRSETHSIPGSKGEA---NLIWT 67


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 236 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 69
           VR  +A  S  +L  P   N  SN TP+ +   I K   N+ S  + L   D C   R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 383 VDPSWLPCPPSSRCGFLRR 327
           ++ S  PCP ++ CGF R+
Sbjct: 524 IEASCQPCPENAECGFNRQ 542


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 390 WIGGSILASLSTFQQMWISKEEYNESGP 307
           W G S  +    F+   +++EEY E GP
Sbjct: 681 WKGASEWSVTEKFKAAKVTREEYLEKGP 708


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +2

Query: 215 RLRSELGRAQH-HTAPGSRGRAA*KHL 292
           R R + GR  + HTAP  RGR    H+
Sbjct: 95  RGRGQRGRGNYGHTAPNRRGRGRGGHM 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,502,482
Number of Sequences: 5004
Number of extensions: 24700
Number of successful extensions: 46
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)