Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30039X
         (421 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   105   4e-24
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    49   3e-07
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    44   1e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    42   3e-05
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...    40   2e-04
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|...    25   3.6  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   4.8  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    24   8.4  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    24   8.4  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  105 bits (251), Expect = 4e-24
 Identities = 48/57 (84%), Positives = 54/57 (94%)
 Frame = -3

Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
           ALAPSS K+KI+APP+RK+SV IGGSILASLSTFQQMWISK+E DESGPGIV+RKCF
Sbjct: 319 ALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 48.8 bits (111), Expect = 3e-07
 Identities = 23/57 (40%), Positives = 39/57 (68%)
 Frame = -3

Query: 419 ALAPSSTKIKIIAPPDRKHSVRIGGSILASLSTFQQMWISKEESDESGPGIVHRKCF 249
           A++    ++KI A P+R H+  +GGSILASLSTF+++ I+ EE  ++   ++ R+ F
Sbjct: 324 AISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 43.6 bits (98), Expect = 1e-05
 Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
 Frame = -3

Query: 374 DRKHSVRIGGSILASLSTFQQMWISKEESDESGP---GIVHRKC 252
           +R ++  +GGSIL+SL TF Q+WIS++E +E G     ++ ++C
Sbjct: 389 ERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 42.3 bits (95), Expect = 3e-05
 Identities = 18/30 (60%), Positives = 23/30 (76%)
 Frame = -3

Query: 365 HSVRIGGSILASLSTFQQMWISKEESDESG 276
           ++V  GGSILASL  FQ +W+SK+E DE G
Sbjct: 389 NAVWFGGSILASLDNFQHLWVSKQEYDEVG 418


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -3

Query: 398 KIKIIAPPDRKHSVRIGGSILAS-LSTFQQMWISKEESDESG 276
           K+KI   P R+H+V IGG++LA  ++    MW+SK E +E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378


>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 193 ELGRAQHHTAPGSRGRAA*KHLRWT 267
           E+ R++ H+ PGS+G A   +L WT
Sbjct: 46  EISRSETHSIPGSKGEA---NLIWT 67


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 202 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 35
           VR  +A  S  +L  P   N  SN TP+ +   I K   N+ S  + L   D C   R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 377 PDRKHSVRIGGSILASLSTFQQMWISKEESDE 282
           P + HS+    + L S S+ ++ + S++E+DE
Sbjct: 471 PSKLHSLTSNATDLLSSSSLKKNFFSQQEADE 502


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 181 RLRSELGRAQH-HTAPGSRGRAA*KHL 258
           R R + GR  + HTAP  RGR    H+
Sbjct: 95  RGRGQRGRGNYGHTAPNRRGRGRGGHM 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,516,967
Number of Sequences: 5004
Number of extensions: 25210
Number of successful extensions: 39
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)