Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0068
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.66 
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    26   4.7  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   4.7  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   8.2  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 206 ARKIRGRPENAGPDPVRNVRRFSRV 132
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -1

Query: 664 ATIARNRSPTYATXSHVSLQCQTRVNSTGSSF 569
           A I  NRSPT     H+S     RVNS+ S+F
Sbjct: 646 ADIILNRSPT---SKHLSTSSLNRVNSSNSNF 674


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  SGCXRCRVWSMFVRYVRFSE 81
           +GC +  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -3

Query: 452 GYLKRVIVTPAVYPRLLEFLHVDIQST 372
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,090
Number of Sequences: 5004
Number of extensions: 51618
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)