Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0056
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   1.8  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    25   5.6  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.7  

>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 141 KIKPNTPTLSTI*LAFDTFTRCA 73
           KI P TP LST+ LA D F+  A
Sbjct: 436 KISPTTPRLSTLALADDMFSSTA 458


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 383 ITKLLTRENNTVNQPLKNHLHVC*ITSQKRVSKNKL 490
           ++KLL  EN+ + + LKNHL        KRV  N L
Sbjct: 730 LSKLLEEENSDLGE-LKNHLDSIIAFGPKRVGPNIL 764


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 444 WR*FFRGWFTVLFSRVRSFVMS-PLTPLLKPQNLETDRILCP 322
           W  FF+GWF  L + +   + + P+  +    NL+T R L P
Sbjct: 437 WHKFFQGWFITLVTFMIILLWTVPVGAIAVFINLDTIRRLWP 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,441
Number of Sequences: 5004
Number of extensions: 37310
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)