Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0090
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    28   1.4  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.3  
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|...    25   7.7  

>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 598 WVLDNE*FRNFHSIRV--MSTHLH 533
           W+LDN  FRN H +    ++THLH
Sbjct: 357 WLLDNSFFRNRHRLLAIHLATHLH 380


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 616 VLVYKRWVLDNE*FRNFHSIRVMSTHLHPLVCSATSWHQ 500
           ++V KR+ L +   RN H  R++  ++H  V +  SW Q
Sbjct: 60  LIVRKRFDLQDSLSRNSHKTRILRMYIHSTVAN-QSWQQ 97


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 584  RVIPEFPQHSSNEYSPPSSGMFSNFLAPGLGP 489
            +V+P  P H+     P + GM +N  AP   P
Sbjct: 1445 QVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAP 1476


>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 322 CYIVMHRILRSKCIVSDSKYQLQG 251
           CY V H  LR KC+V     +++G
Sbjct: 5   CYAVYHPALRLKCLVRKGLGKIKG 28


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,960
Number of Sequences: 5004
Number of extensions: 57618
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)