Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0122
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 162 4e-41
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 100 3e-22
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 97 2e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 89 6e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 66 3e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 66 5e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 53 3e-08
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 43 4e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 40 3e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.058
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.31
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.72
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.9
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.8
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 26 3.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 5.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 5.1
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.1
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 162 bits (393), Expect = 4e-41
Identities = 72/78 (92%), Positives = 74/78 (94%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 435
KYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQI+FETF
Sbjct: 68 KYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQIIFETF 127
Query: 436 NTPAMYVAIQAVLSLYAS 489
N PA YVAIQAVLSLYAS
Sbjct: 128 NAPAFYVAIQAVLSLYAS 145
Score = 135 bits (326), Expect = 6e-33
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +2
Query: 59 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 238
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 239 RGILTPNTP 265
RGILT P
Sbjct: 62 RGILTLKYP 70
Score = 45.6 bits (103), Expect = 6e-06
Identities = 23/37 (62%), Positives = 24/37 (64%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGYRTPPRHSASGT*PGGDLTDY 619
LDSGDGV+HTVPIYEGY P G DLTDY
Sbjct: 153 LDSGDGVTHTVPIYEGYALPHAIMRLDL-AGRDLTDY 188
Score = 31.1 bits (67), Expect = 0.13
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = +3
Query: 489 GRTTGIVWTPATVSPTPCPSTKDTALPHAILRLGLS 596
GRTTGIV P + ALPHAI+RL L+
Sbjct: 146 GRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA 181
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 99.5 bits (237), Expect = 3e-22
Identities = 42/77 (54%), Positives = 53/77 (68%)
Frame = +1
Query: 259 YPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 438
YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE+FN
Sbjct: 92 YPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFN 151
Query: 439 TPAMYVAIQAVLSLYAS 489
+Y+A+QAVL+L AS
Sbjct: 152 CAGLYIAVQAVLALAAS 168
Score = 42.7 bits (96), Expect = 4e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 77 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 226
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +2
Query: 473 SRCTRRSYHRYRLDSGDGVSHTVPIYEGY 559
S+ T RS +DSGDGV+H +P+ EGY
Sbjct: 172 SKVTDRSLTGTVVDSGDGVTHIIPVAEGY 200
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 96.7 bits (230), Expect = 2e-21
Identities = 40/77 (51%), Positives = 59/77 (76%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 435
KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + MFE +
Sbjct: 68 KYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCETMFERY 127
Query: 436 NTPAMYVAIQAVLSLYA 486
+YVAIQAVLSLYA
Sbjct: 128 GFGGVYVAIQAVLSLYA 144
Score = 58.8 bits (136), Expect = 6e-10
Identities = 32/69 (46%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Frame = +2
Query: 65 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 238
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 239 RGILTPNTP 265
R +L P
Sbjct: 62 RSLLQVKYP 70
Score = 31.1 bits (67), Expect = 0.13
Identities = 11/15 (73%), Positives = 14/15 (93%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYE 553
+DSGDGV+H VP+YE
Sbjct: 153 VDSGDGVTHIVPVYE 167
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 88.6 bits (210), Expect = 6e-19
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Frame = +1
Query: 262 PIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFN 438
PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET N
Sbjct: 74 PIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLN 133
Query: 439 TPAMYVAIQAVLSLYAS 489
PA+ ++Q VL+LYAS
Sbjct: 134 VPALSFSLQPVLALYAS 150
Score = 76.6 bits (180), Expect = 3e-15
Identities = 34/63 (53%), Positives = 44/63 (69%)
Frame = +2
Query: 77 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTP 256
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 257 NTP 265
P
Sbjct: 72 QRP 74
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 509 LDSGDGVSHTVPIYEGYRTPPRHSASGT*PGGDLTDY 619
L+ GDG++H+VPIY+G+ P G D+TDY
Sbjct: 158 LECGDGLTHSVPIYDGFSIPSAIQQEEI-GGRDVTDY 193
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.5 bits (155), Expect = 3e-12
Identities = 31/85 (36%), Positives = 50/85 (58%)
Frame = +1
Query: 262 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 441
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 442 PAMYVAIQAVLSLYASVVPPVSSGL 516
P++ I + S Y + P SSG+
Sbjct: 145 PSVAYGIDGLFSFYHN-TKPSSSGI 168
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 77 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 172
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 65.7 bits (153), Expect = 5e-12
Identities = 31/78 (39%), Positives = 43/78 (55%)
Frame = +1
Query: 256 KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETF 435
K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MFE+
Sbjct: 66 KNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMFESL 125
Query: 436 NTPAMYVAIQAVLSLYAS 489
PA Y+A Q + +AS
Sbjct: 126 RCPATYLAKQETCAAFAS 143
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 62 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 163
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 53.2 bits (122), Expect = 3e-08
Identities = 22/73 (30%), Positives = 42/73 (57%)
Frame = +1
Query: 271 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 450
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 451 YVAIQAVLSLYAS 489
Y+ QAV +A+
Sbjct: 134 YLTKQAVCVAFAN 146
Score = 38.7 bits (86), Expect = 7e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 62 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 232
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQ 58
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 42.7 bits (96), Expect = 4e-05
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +1
Query: 247 PDPKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMT 414
P+ PI+ G V +W+ ++ W H Y+ L P + +PV L +RE T
Sbjct: 108 PNEIQPIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELAT 166
Query: 415 QIMFETFNTPAMYVAIQAVLSLYA 486
Q FE P +A + ++ LYA
Sbjct: 167 QFFFEECQVPGFTIAYEPLMGLYA 190
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 39.9 bits (89), Expect = 3e-04
Identities = 20/55 (36%), Positives = 30/55 (54%)
Frame = +2
Query: 122 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTPNTPSNTESSL 286
G+ PRA F ++ P H G+++ M KD G+E S +G +P TP N S +
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTPENEISEV 554
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 32.3 bits (70), Expect = 0.058
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 322 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASVV 495
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + + A+ L V
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQHLNIQAV 1458
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.31
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 219 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 58
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.7 bits (61), Expect = 0.72
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 260 YLGSGYLFCSVPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 141
Y L + L+ K+PS PY SRP A S TR
Sbjct: 296 YFKENGLNYDIDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 222 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 106
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 364 LLTEAPLNPKANREKMTQIMFETFN 438
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 489 GRTTGIVWTPATVSPTPCPSTKDTALPHAILRLG-LSPAATSQTT 620
G T + T TVS T S +T LPHA+ R+G L P ++T
Sbjct: 1331 GVTVHNLGTQGTVSVTS--SVIETILPHALRRIGALKPEELGKST 1373
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 104 TYRSHCLLPTRQLLRRTS*ISEI 36
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 495 TTGIVWTPATVSPTPCPSTKDTA 563
TT TPA V P P PST TA
Sbjct: 838 TTSSHITPADVHPLPPPSTSTTA 860
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 25.8 bits (54), Expect = 5.1
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 250 DPKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 351
+P YP G++ +W ++E + E+R+ P+
Sbjct: 241 NPFYPRTDGLLFSWSELESMNSENMKPEIRLIPK 274
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +2
Query: 497 HRYRLDSGDGVSHTVPIYEGYRTPPR 574
H+ + S V+H +P+ G +PPR
Sbjct: 975 HQEQTTSTTKVAHPIPVSNGLSSPPR 1000
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,735
Number of Sequences: 5004
Number of extensions: 67783
Number of successful extensions: 224
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -