Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0082
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    26   4.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   5.5  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.5  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.3  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.6  

>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +2

Query: 365 SHHQVLMITEQFGKSTLSNKK*KRELSEPVQAFSRGGPVPNSPYSESYT 511
           SH+    +  +     L +    R++SE    F R  P P++P S   T
Sbjct: 175 SHYNAQSVKNKTSNEDLFDTNEMRKISERFYHFDRQAPFPSNPLSAGAT 223


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 386 ITEQFGKSTLSNKK*KRELSEPVQAFSRGGPVPNSPYSESYTIH 517
           IT+ F K+  SN       S PVQ   +  P  +   +ES T+H
Sbjct: 620 ITDGFDKALRSNSLRTHRDSRPVQPLLKQRPQLHRALTESATLH 663


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 393 NNSGSLPFRTKNRKENYQNQFKHSRGGARYPIR 491
           N++ S PF  +N+K N Q++  HS   +  P R
Sbjct: 83  NSTRSPPFHLQNQKSNGQSEVWHSSDDSGSPKR 115


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +2

Query: 158  NAISILMSMRRYRSFKITSQQNNDQACINDVQAPAGRCAV 277
            NA+  ++S+R    F+I   ++  ++ I+ VQ+  G+ +V
Sbjct: 1549 NAVKFVLSLRGVYDFRIYRDEHTLRSIISKVQSKTGQQSV 1588


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 387 LQNNSGSLPFRTKNRKENYQNQF 455
           +QN+S ++P++ KN  E+Y   F
Sbjct: 888 IQNSSKAIPYQVKNLLESYLADF 910


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,169
Number of Sequences: 5004
Number of extensions: 57291
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)