Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0055
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.2  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.9  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   3.9  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   5.1  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 486 SPSPRRGSPDAVKGERKVPIAQTGP 560
           S +PR  SP A   E K P+AQ  P
Sbjct: 425 SSNPRTSSPLASNAENKPPVAQQSP 449


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 181 SPVQCSPKTTSDRGDNSRLHLVTSAQHKGRQ-GQVPSQS 294
           SP++CSP    D   + + +  TS++  G++ GQ+  QS
Sbjct: 33  SPIECSPIQQLDLSGSFKNYSTTSSRANGKKFGQLAMQS 71


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +3

Query: 408 SSSDVTRCLKARRLRLWNRGCHQTGFSPSPRRG 506
           SS   TR  +  R     RGC  T   P PR G
Sbjct: 319 SSKGPTRLYEVARFNCTTRGCEYTQNIPCPRAG 351


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 183 ACPVLSEDYFRPWRQLAAAS 242
           +CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,346
Number of Sequences: 5004
Number of extensions: 50601
Number of successful extensions: 138
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)