Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0106
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    26   6.5  
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar...    25   8.6  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    25   8.6  

>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 5   LPRPSDPKPTSPARGAPCRSTNEALARR 88
           + +  +P P S A  +P + + EALA R
Sbjct: 59  IQKKKEPSPASSASASPVKKSAEALAER 86


>SPAC6C3.06c |||P-type ATPase, calcium
           transporting|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 288 SKALXVDFILIVIICVNVSPKYGSDTLIN 374
           SK L  + +L + +C NV+P  G D +++
Sbjct: 455 SKTLVRNLVLALSLCHNVTPSKGHDGVVS 483


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 50  APCRSTNEALARRGRHGTTV 109
           A C ST  +L R+ RHG TV
Sbjct: 420 ANCSSTKTSLWRKDRHGQTV 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,726,373
Number of Sequences: 5004
Number of extensions: 50751
Number of successful extensions: 124
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)