Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0088
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   182   6e-47
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   1.9  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   2.6  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   5.9  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  182 bits (442), Expect = 6e-47
 Identities = 96/231 (41%), Positives = 126/231 (54%), Gaps = 2/231 (0%)
 Frame = +2

Query: 2   NISS**NIGSLLALCLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHAN 181
           NIS   N GSLLA  L+IQI+ G+ L  +Y  N+++AF  V  I R+VNYG ++R  HAN
Sbjct: 25  NISYFWNFGSLLACVLVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHAN 84

Query: 182 GASFFFICIYLHIGRGIYYESFNLKYV*L--XXXXXXXXXXXXXXXXYVLP*GQISFWGA 355
           GASFFFI +YLHIGRG+YY S+                         Y LP  Q+SFWGA
Sbjct: 85  GASFFFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGA 144

Query: 356 TVITNLLSAIPYLGTILVN*I*GGFAVDNATLTRFYTXXXXXXXXXXXXXXXXXXXXXQT 535
           TVITNLLSA+P++G  LV+ + GGF+V N TL RF++                       
Sbjct: 145 TVITNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTN 204

Query: 536 GSNNPLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXXNPYLLGDPD 688
           GS+NPLG+  N+D+IP +P++  KD                 NPY   +PD
Sbjct: 205 GSSNPLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPYGFMEPD 255


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 268 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGN 357
           NWN      +SN  +RLC TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 268 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 423
           N +Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 295 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 396
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,158
Number of Sequences: 5004
Number of extensions: 38668
Number of successful extensions: 70
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)