Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--0119
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   1.8  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   1.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   5.5  
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    26   5.5  
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ...    25   9.7  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 124 ESFRTFQFQCSKFIYVVHHETAI*NCDNNESDVSYCNVSFN 246
           ES   F+ +C   + V+    AI +C NN SD+   N+S+N
Sbjct: 415 ESVNIFREEC---LSVLRSWNAILHCSNNSSDLLERNMSYN 452


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 516 SRTAEKIAPFIYSNYEVLFDR*Y*VLCYXVC 608
           SR+A + + F+Y N  VLFD  Y V  Y VC
Sbjct: 553 SRSAFEFS-FVYDNEIVLFDTCYMVCTYIVC 582


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -1

Query: 196 FIWLFHDALRK*ISNIEIEMFEKILKRF--RFSHKISQKIVRKFKTNNMKNAFXIITNKR 23
           F+W+F   +   ++++  E++  + +RF  R    I+Q I +K  T+  K  F  +   +
Sbjct: 302 FLWVFVLLIGPYLASVVKELYVHVSRRFMLRIKAAITQMIYKKVLTS--KTLFVAVDGSK 359

Query: 22  ITL 14
           I L
Sbjct: 360 INL 362


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 499 SYYNQVGNCRYKYFYWKYI 443
           S+Y ++G CRYK  Y  Y+
Sbjct: 119 SFYERLGFCRYKRLYRYYL 137


>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 82  LFFGRFYERIEIFSESFRTFQFQCSK 159
           +FF R  E  E  SE+F  ++F C K
Sbjct: 349 VFFLRHIEEFEEASEAFEIYKFLCVK 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,365,502
Number of Sequences: 5004
Number of extensions: 44487
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)