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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte10c12
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   237   1e-63
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   133   2e-32
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   128   6e-31
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...   125   6e-30
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.41 
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz...    28   0.94 
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    27   2.9  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   3.8  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   5.0  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        26   5.0  
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe...    26   5.0  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   5.0  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   6.6  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   6.6  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   8.8  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  237 bits (579), Expect = 1e-63
 Identities = 102/134 (76%), Positives = 118/134 (88%)
 Frame = +2

Query: 146 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV 325
           MREIVHIQAGQCGNQ+GA FW  I+DEHG+D+ G Y G S+ Q ER+NVY+NEA+GGKYV
Sbjct: 1   MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHGTSEAQHERLNVYFNEAAGGKYV 60

Query: 326 PRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVV 505
           PRAV+VDLEPGTMD+V+SG FG +FRPDN ++GQSGAGN WAKGHYTEGAEL D+VLDVV
Sbjct: 61  PRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVV 120

Query: 506 RKEAEGCDCLQGFQ 547
           R+EAE CD LQGFQ
Sbjct: 121 RREAEACDALQGFQ 134


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  133 bits (321), Expect = 2e-32
 Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
 Frame = +2

Query: 146 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER--INVYYNEASGGK 319
           MREI+ I  GQ G QIG   WE+   EHGI   G  + ++  Q      + +++E   GK
Sbjct: 1   MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60

Query: 320 YVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLD 499
           YVPR++ VDLEP  +D VR+GP+  +F P+  + G+  A NN+A+GHYT G ELVD V D
Sbjct: 61  YVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTD 120

Query: 500 VVRKEAEGCDCLQGF 544
            +R+ A+ C  LQGF
Sbjct: 121 KIRRIADNCSGLQGF 135


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  128 bits (309), Expect = 6e-31
 Identities = 58/139 (41%), Positives = 86/139 (61%), Gaps = 6/139 (4%)
 Frame = +2

Query: 146 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLER------INVYYNEA 307
           MRE++ +  GQ G QIG   WE+   EHGI   G  + +S++             +++E 
Sbjct: 1   MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSET 60

Query: 308 SGGKYVPRAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVD 487
             GK+VPR++ VDLEP  +D VR+GP+  +F P+  V G+  A NN+A+GHYT G E++D
Sbjct: 61  GQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMID 120

Query: 488 SVLDVVRKEAEGCDCLQGF 544
           SVL+ +R+ A+ C  LQGF
Sbjct: 121 SVLERIRRMADNCSGLQGF 139


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score =  125 bits (301), Expect = 6e-30
 Identities = 51/134 (38%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
 Frame = +2

Query: 149 REIVHIQAGQCGNQIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYVP 328
           REI+ +QAGQCGNQIG++FW+ +  EHGI   G     +   ++R +V++ ++   +Y+P
Sbjct: 3   REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFATEGVDRKDVFFYQSDDTRYIP 62

Query: 329 RAVMVDLEPGTMDSVRSGPFGQIFRPDNFVFGQS--GAGNNWAKGHYTEGAELVDSVLDV 502
           RA+++DLEP  ++++ S  +G ++ P+N +  ++  GAGNNWA G Y+    + + ++D+
Sbjct: 63  RAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDM 121

Query: 503 VRKEAEGCDCLQGF 544
           + +EA+G D L+GF
Sbjct: 122 IDREADGSDSLEGF 135


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
 Frame = -1

Query: 584 YQIQYLLPENELAENPADNRSLLLLF*LHPVPNQPVQPPLCNVLSPSYSPPQ---TVRRR 414
           Y   YL P   +A +P  N  L      H  P  P   PL N +SP Y P       R  
Sbjct: 26  YTGPYLTPSGTMAYHPG-NAPLFTQAPPHTNPQGPPPFPLFNSISPVYDPATGRLLYRNV 84

Query: 413 SCPVGRFA-QTARNGRSPWFQAQGPPSQL 330
           +  V   A     NG +  +   GPPSQL
Sbjct: 85  NTQVSHTAIPNPANGYAAVY--GGPPSQL 111


>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 255

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -3

Query: 438 PAPDCPKTKLSGRKICPNGPERTESMVPGSRS 343
           P+   PK  L  R I PNGPE  +  + GS S
Sbjct: 20  PSTPPPKEVLHTRVIVPNGPEEIKLRLVGSHS 51


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 380 GPFGQIFRPDNFVFGQSGAG-NNWAKGHYTEGAEL 481
           GP+G +F P  F+F  +G    NW+   Y E A L
Sbjct: 157 GPYGTMFLPQQFIFDSNGRPLLNWSY-LYKEHAHL 190


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 214 YFPELCSDLIPALTRLDVDDFPHDCTKNLEPPESN 110
           +F E+   + P   +LD+DD  +     + P E+N
Sbjct: 36  FFQEIIHSISPDTFQLDIDDILYKIYSKIPPEENN 70


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 111 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 269
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 449 AKGHYTEGAELVDSVLDVVRKEAEGCDCLQ 538
           A+GH   G ELV +  D +RK++E    L+
Sbjct: 183 AEGHPDVGVELVRAGADTLRKDSENHTALE 212


>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 578 IQYLLPENELAENPADNRSLL 516
           +QY+L +NEL  NP +  ++L
Sbjct: 342 VQYILEQNELGRNPYNTTNVL 362


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 111 FDSGGSKFLVQS*GKSSTSRRVNAGIRSEQSSGK*SRTSTALTPRVLTAATPT 269
           F S  S     S   +STS RV++  ++  SSG  + T+  +   V  +AT T
Sbjct: 165 FVSPSSSSSSSSSAATSTSTRVSSSAKASTSSGAIAYTTKCVVVPVTASATAT 217


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = -3

Query: 171 AWMWTISLMIALKIWNPPNRI 109
           AW+W ++LM+    +  PN++
Sbjct: 458 AWLWFMALMLLFPSYQNPNKV 478


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 488 NQPVQPPLCNVLSPSYSPPQT 426
           N+P +PP+ N  +    PPQT
Sbjct: 86  NEPAKPPIPNAATKPTFPPQT 106


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
            2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
 Frame = +2

Query: 188  QIGAKFWEVISDEHGIDATGAYSGDSDLQLERINVYYNEASGGKYV-----PRAVMVDLE 352
            QIG      ++D   IDA  A  G SD QL+ I+ +  E      +     PR++++  E
Sbjct: 742  QIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETATILRAATPRSLIIIDE 801

Query: 353  PGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDV 502
             G   S   G FG  +     +  Q G    +A  HY E  +L + +  V
Sbjct: 802  LGRGTSTTDG-FGLAWAITEHIVTQIGCFCLFAT-HYHEMTKLSEEITTV 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,614,591
Number of Sequences: 5004
Number of extensions: 55201
Number of successful extensions: 179
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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