Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b07
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   1.9  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   5.8  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   7.7  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 307 HCREESPILSRRKHYFGGRFELLAWPVFPVRQDS 408
           HCR  SP  +    Y      LLAWP +  + DS
Sbjct: 266 HCRNSSPHDNPILEYLFALVSLLAWPFYRRKLDS 299


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 541 SSRLLLSKLNCSAVIK*IIGVTGLKATFVD*ARAAFRFLGESKSA--SLGVLGRQARPGA 368
           S+ +  S+L+C +    I   T    +F D        L +S+ A  SLG+  R    G+
Sbjct: 152 SNLIETSELSCLSSSPMIRSHTIPSLSFTDQVSTTISTLDKSEQAPSSLGIYYRSPSSGS 211

Query: 367 QISRRNNVCV 338
            I R  +VC+
Sbjct: 212 PIGRTKSVCL 221


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 350 ISAGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVD 457
           IS  D ++W GL   YA++  +  A K+     ++D
Sbjct: 679 ISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,321
Number of Sequences: 5004
Number of extensions: 48224
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)