Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b03
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyc...    33   0.031
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    29   0.50 
SPBC14C8.15 |||triglyceride lipase-cholesterol esterase |Schizos...    29   0.66 
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   2.0  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    27   3.5  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    26   4.7  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    25   8.1  

>SPAC3A12.12 |atp11||F1-ATPase chaperone Atp11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 33.5 bits (73), Expect = 0.031
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 519 DAKKNTFHDAISETQRENNEDFHLNATELLKKHQYPVEEHTV 644
           + KKNT ++      +   E+ H+  T LLKK Q    EH +
Sbjct: 41  EVKKNTVYERYERKLKSKAEELHMPVTNLLKKGQTKEREHVI 82


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 600 ELLKKHQYPVEEHTVATDDGYHLTVLRIPPHAP 698
           E+ K   Y VE+H V T+D Y L + RI   +P
Sbjct: 83  EMCKISGYYVEDHLVRTEDDYILCIHRISKDSP 115


>SPBC14C8.15 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 460

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 600 ELLKKHQYPVEEHTVATDDGYHLTVLRI 683
           +L   H Y +EEH V T DGY L + R+
Sbjct: 77  DLCALHGYDLEEHFVRTTDGYLLGLHRV 104


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 323 DERETPLAGVFCHYETQERS*YQSRRFRRLEEYRNGLR 436
           +ER    AG F H+   E     S  FRR +E R   R
Sbjct: 362 EERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERR 399


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 19/82 (23%), Positives = 36/82 (43%)
 Frame = +3

Query: 417 NIEMASGPNSPVQTEQDIEDIFGDSLKTWDHFTDDAKKNTFHDAISETQRENNEDFHLNA 596
           N E A   N   + E+   + F + +K   H   +A  N F+++  + +   NE++  + 
Sbjct: 72  NFEQAYHSNIRYEQEESDNEEFENVVKN-GH---EASTNVFYESDGDDEEFVNEEYENSI 127

Query: 597 TELLKKHQYPVEEHTVATDDGY 662
            E      Y + E T AT+  +
Sbjct: 128 DEESDDEGYSLNEDTTATNASF 149


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 291  QEDETKQVHDKMNVKHHSPVYSVIMKLKKEVDINHGDSV-VWKNIEMASGPNSPVQTEQD 467
            +ED TK V  ++++   + +   I  L+ ++  NH  +  +W  I   + P S + T+++
Sbjct: 1028 EEDITKAVEKRIDITSRASISGAIEALRNDLGQNHDFATEIWNAI---NNPKSDLLTKRN 1084

Query: 468  I 470
            +
Sbjct: 1085 L 1085


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 516 DDAKKNTFHDAISETQRENNEDFHLNATELLKKHQYPVE 632
           DDAK   F D   E +    E++     EL ++ ++P E
Sbjct: 439 DDAKSEMFVDLSEEEEVRQYEEYRKKQKELQEELEFPDE 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,823
Number of Sequences: 5004
Number of extensions: 47270
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)