Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10a17
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces pombe...   262   3e-71
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   2.6  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      27   2.6  
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po...    27   3.5  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   8.0  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    25   8.0  

>SPAC2F7.13c |||tryptophan-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 395

 Score =  262 bits (642), Expect = 3e-71
 Identities = 125/205 (60%), Positives = 154/205 (75%), Gaps = 5/205 (2%)
 Frame = +2

Query: 101 DEDFVDPWTVTGK----SDTGIDYDKLIKRFGSQKIDDELIQRFEKVIGRKAHHLLRRGI 268
           +E  V PW V G      + GIDY++LI +FG++KI  E ++RFEK+ G+K H LLRRG 
Sbjct: 4   EEQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGA 63

Query: 269 FFSHRDLNVILNLHEAGKKFYLYTGRGPSSDSMHLGHMIPFMFTKWLQDVFNVPLIIQLT 448
           FFSHRD ++IL+ +E  K FYLYTGRGPSSDSMHLGHMIPFMF KWLQDVF VPL+IQLT
Sbjct: 64  FFSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLT 123

Query: 449 DDEKVLWRD-IKVEDARKMAYNNAKDIIAIGFDPSNTFIFNDLDFIGQCPAFYQNMLRIQ 625
           DDEK L++  + +ED ++ A  NAKDIIA+GFDP  TFIF +  ++G   AFYQN++RI 
Sbjct: 124 DDEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVG--GAFYQNVVRIA 181

Query: 626 KCVTYNQVKGIFGFGDSDVIGKITF 700
           KC+T NQ K  FGF DSD IGKI F
Sbjct: 182 KCITANQSKACFGFTDSDSIGKIHF 206


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +2

Query: 83  NIAIAEDEDFVDPWTVTGKSDTGIDYDKLIKRFGSQKIDDELIQRFEKVI 232
           N+   ED+DF+D  T T   +   DY  + ++  +   D ++  +  K I
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTENLNSDSDIQNKRTKSI 398


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 700 ECNLANDIRITETEYALYLVVCDTFLYP*HVLVKSWA 590
           +CN+   I    T      V+CD  + P  V++K WA
Sbjct: 164 DCNINKTISTLNTRLMRSYVLCDPRVRPLIVMIKYWA 200


>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 575 DFIGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKI 694
           DF+ +C   +QN+  I  C TYN  K   G  D ++I  +
Sbjct: 41  DFLAKCKTEFQNVKAI--CRTYNS-KFYMGIFDKEIIDNL 77


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +2

Query: 209 IQRFEKVIGRKAHHLLRRGIFFSHRDLNVILNL 307
           + R +   GRK H ++   +F  HRD++   +L
Sbjct: 414 LHRVKLPFGRKIHFVVMNNLFPPHRDIHQTFDL 446


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 581 IGQCPAFYQNMLRIQKCVTYNQVKGIFGFGDSDVIGKITFP 703
           + + PA Y N  +    +TY+   GIF     D I +I FP
Sbjct: 27  VSKIPAVYSNDNKFV-FLTYDTFIGIFSLITGDCINRIFFP 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,998,339
Number of Sequences: 5004
Number of extensions: 65030
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)