Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0117
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   4.1  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    27   4.1  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 731  NSSFILKFSTRFPSTSV*QSYLPLFLPPPGRFSP 630
            NSSF +KF   FP  S+   Y   F+ P    SP
Sbjct: 1287 NSSFDMKFGLHFPKISL-NLYDGTFITPENSLSP 1319


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 241 SSNQHINYHRKIAILYISTFTTYCLCIVKNKTKLLNSVSASK 116
           S    ++YH+K+  L+ + +   C+C   N  KLL S +  K
Sbjct: 209 SDRTDLSYHKKLNTLFTAYWDLQCMC--SNPPKLLASDTLPK 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,575
Number of Sequences: 5004
Number of extensions: 60954
Number of successful extensions: 124
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)