Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0096
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.74 
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    26   3.9  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    26   5.2  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   5.2  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    25   6.9  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    25   9.1  

>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = -2

Query: 580 YTNLLSNYSLYKMTRVPTCSQIFNVPLCGAKACLPFSYLQREL 452
           YT++L NYS ++     + + I NVPL      L FSYL R L
Sbjct: 307 YTSMLYNYSSFQAGNFLSLAGIINVPL-----LLIFSYLTRYL 344


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 120 FQTIILSSLSQFYFSLILFIHTPFTFP 200
           F  +ILSSLS FY ++  F     T P
Sbjct: 300 FIVLILSSLSNFYLNIATFTQIKVTSP 326


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 357 MKNTSTLFSK*ILFLNFNLKH 419
           +KN +TL+ K ++F++FN  H
Sbjct: 326 IKNAATLYEKKVVFMSFNRWH 346


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 110  IWQDGTGRSFVIRSETML 57
            IWQDG+G+ FV  + T L
Sbjct: 1184 IWQDGSGKKFVGGTNTTL 1201


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -2

Query: 199 GNVNGV-WMNKIKLK*NCDKDDNIIVWK*KS 110
           G VNG+ W +  +   +C  DD I VW  +S
Sbjct: 247 GTVNGLAWTSDARYLASCGTDDRIRVWNMES 277


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +3

Query: 87  STGPILPNDFHFQTIILSSLSQFYFSLILF--IHTPFTFP 200
           S GP+  + FH+Q  I+      Y   + F  IH P  +P
Sbjct: 22  SAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,786
Number of Sequences: 5004
Number of extensions: 46889
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)