Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0094
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    27   2.2  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    25   9.1  

>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 275 FMTNILRRCPSTKLTKCGILNYLDR 349
           ++T IL+ CP+T      +L YLDR
Sbjct: 85  YLTRILKYCPATNDVFLSVLIYLDR 109


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 581 TLRHEFYDSVLQSNVFPAQTKT 646
           T R E YD V+  N  P+Q  T
Sbjct: 161 TYRKELYDEVISMNEIPSQAST 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,681
Number of Sequences: 5004
Number of extensions: 53176
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)