Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0083
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.02 |mpr1|spy1|response regulator phosphotransferase |Sch...    26   4.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   5.4  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    26   5.4  

>SPBC725.02 |mpr1|spy1|response regulator phosphotransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 330 LRKSHNNSHAL-GSSAMIFIVT-RKKCKIVQNWTDNSSHNGKMSIQQQ 193
           L+K  +  H L GSSA++ +   RK C+ +QN+    S +G M +  +
Sbjct: 213 LKKLSSLGHFLKGSSAVLGLTKMRKVCERIQNYGSLRSRDGVMKLPSE 260


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 646  KELQRNVLSISQCLLLISMTFVY*LVVYGST*CTFT 539
            K +Q  ++ I   LLL++MT V   +VYG   CT T
Sbjct: 940  KHMQARIIGI-MLLLLMAMTVVPFQLVYGVALCTQT 974


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = -2

Query: 295 IIGNDIYCNTQKMQNRTKLDG---QLKSQRQDEHPAATLNMLHSSDTV*QNSSGAASFRR 125
           I+ ND   N +K  +  +++G   Q+   R ++   AT ++  SSD    ++S   SF +
Sbjct: 65  IVANDTVSNVRKPSDTKQVNGAGGQVNHSRAEDSDYATSDLSESSDVGDDDNSCIFSFSK 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,013
Number of Sequences: 5004
Number of extensions: 49616
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)