Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Nnor0086
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   5.2  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   5.2  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   5.2  
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi...    25   5.2  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   5.2  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   9.1  

>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 355 CSCPACKKRGPFRTSG 308
           C+CP C+K  P  T G
Sbjct: 144 CTCPLCRKEVPHETVG 159


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 473  MNLAPRTLPPFMYRFLLCLAVLLKPFI 393
            M++AP  L   +  F  CL ++L+P +
Sbjct: 1482 MSVAPLVLSAIIAFFFFCLGIMLRPIL 1508


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
 Frame = +3

Query: 93  STFITKITIQDEVFSIAAMRSGCCECCSVL*PGQGRVECLQAAAPSQLRKRGRRQFPHED 272
           +T   K ++Q++  +  + ++GC + CSV   G G +      A S L     ++   E+
Sbjct: 124 ATVSRKSSLQEKYSTRFSYKAGCSDSCSVTVSGTGELIGPTRNAHSNLTPTVIQRIDFEN 183

Query: 273 IR*A-QAHHRQTQPEVRNGPRFLQAGHEQ 356
           +     +    TQP  +  P  LQ+   Q
Sbjct: 184 VNEKNNSSSEDTQPNGKR-PSSLQSNFSQ 211


>SPBC1539.01c |||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +1

Query: 214 KLQHRLNYESEVEDNFRMKIYAEHKHIIAKHNQKYEMGLVSYKLGMNKYGD 366
           K ++ +    E  D+F  +++ E  +I  K  ++  +   SYK G+ +Y +
Sbjct: 39  KYRYEMTSTEEDIDSFFSRVFGEKNYISDKSLREQIVTHKSYKHGLKRYNE 89


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 176  SSLTWSRKSGVPSSCSTV-STTKARSKTISA 265
            SSL+ S  SG+ SS ST+ S+T++ S + SA
Sbjct: 983  SSLSSSTTSGLTSSSSTIPSSTRSESNSESA 1013


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
 Frame = +2

Query: 143 CYAQWLL*---VLFSSLTWSRKSGVPSSCS 223
           C  QWL     VLF    W+  S +P SC+
Sbjct: 533 CQKQWLKTGDLVLFEGTDWNVSSLIPKSCN 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,966
Number of Sequences: 5004
Number of extensions: 38135
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)