Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120063.Seq
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    31   0.25 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   4.0  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    26   5.3  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   9.3  

>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
 Frame = +1

Query: 412 CKKCHFVDVHHTFKAA---LTSYFNLDMYYAQ-TTFGLCYNRWAKESVGFFW 555
           C +CH  D +HTF+ A   +  Y  ++ +Y +  T   C N   K+    +W
Sbjct: 350 CDECHDADQNHTFEHANRIICGYCAMESFYKKDATCPHCGNMTVKKQTSAYW 401


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 360 YAGFFNQIVRNHKSNFIKRYH 298
           +  F N I + HK+N+I+ YH
Sbjct: 882 FKNFINVITQLHKTNYIQAYH 902


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 734 IFVWGIVGKLYTFRIL*YLTHIRRYKKIIRCSLNFITLFTTKH 606
           +F  G+   ++  R+L +  HIR  K+I+      + L T KH
Sbjct: 113 VFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKH 155


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 603 IMLSRKESNEIETASNNFFVSPYVSQIL 686
           ++ S  ES  +E +S N  V+PYVS++L
Sbjct: 749 MLFSAIESRVLEVSSLNPAVAPYVSEML 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,269,365
Number of Sequences: 5004
Number of extensions: 68536
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)