Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060156.seq
(626 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.24
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.3
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.2
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 2.9
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 2.9
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 2.9
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 3.9
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 25 6.8
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 6.8
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 6.8
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 6.8
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 6.8
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 6.8
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 6.8
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.3 bits (65), Expect = 0.24
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +2
Query: 269 PAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 433
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +1
Query: 37 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 216
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 217 TEKTQKSLFDGI 252
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 303 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 422
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 2.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 327 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 458
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 221 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 90
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +3
Query: 252 RKFDSSQLK-HTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETCEKN 416
RK +++K H E+ E P+ ++ + EKEK+ + +E+ P H T +K+
Sbjct: 792 RKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQQKS 851
Query: 417 PLPTKDVIEQEKSA 458
P+ + +++ A
Sbjct: 852 PVEKPKKLRKDRYA 865
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/67 (23%), Positives = 28/67 (41%)
Frame = +3
Query: 252 RKFDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 431
+ FD +K +EK L + AE EK++ N +E+ + + N K
Sbjct: 74 KSFDEELVKFHNLEEKLQLTETKCRNAESEKSRVENELEDLTSSLFEEANRMVAN--ARK 131
Query: 432 DVIEQEK 452
+ + EK
Sbjct: 132 ETVASEK 138
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 6.8
Identities = 21/84 (25%), Positives = 42/84 (50%)
Frame = +1
Query: 10 AECTNLLSPSSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 189
A+ L +SS +Y +++ + ++ + K A ++ TS D +N K
Sbjct: 727 ADMMMLQEGASSMVY-YSLTNLDNPGATVNEAAKTAATIEQNEHEIQTSV--DPISNVKA 783
Query: 190 VLPSAEDVATEKTQKSLFDGIESL 261
+LP+A+DV+++ + S D +E L
Sbjct: 784 ILPNADDVSSKNS--STEDQLECL 805
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 336 KEKNKFLNGIENFDPTKLKHTETCEKN 416
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 230 WVFSVATSSADGSTIFSLVSTSRRQL 153
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 233 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 135
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,800
Number of Sequences: 5004
Number of extensions: 50136
Number of successful extensions: 182
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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