Silkworm BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021024
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc...    28   1.3  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    27   3.8  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   5.0  

>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 852

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 358 KYLVVTSNPVIFTNLYNKNLQLHKYFLT 441
           KYL V    V+F NL    L L+K+F+T
Sbjct: 516 KYLPVKYEHVVFCNLSEFQLSLYKHFIT 543


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -1

Query: 431 YLCSCKFLLYKFVKMTGFEVTTKYFYPSTKIIKKNYS 321
           Y+C   ++L+K ++M  +  T K +Y S+K +   +S
Sbjct: 236 YVCGIPYILFKIIRM--YTSTQKEYYASSKQMITTFS 270


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 539 CKKCLRLPKISKKLCTTXNVLFCKCAKNAC 450
           C K + L      LC   N++ C C+ ++C
Sbjct: 92  CIKTIELEATVNCLCVNENLVVCGCSNSSC 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,208
Number of Sequences: 5004
Number of extensions: 47873
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)