Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0002
(594 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 0.89
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 28 1.2
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 27 2.1
SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po... 27 2.1
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 27 2.1
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 26 4.8
SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces po... 25 6.3
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 28.3 bits (60), Expect = 0.89
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTP-----KPRPPQCSGMCPFIRPTSQAFFTTGH 367
PTS Y+A P + S S +P P P S P PTS ++ T
Sbjct: 1601 PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Query: 366 GYSPVL-SY*PAT 331
YSP SY P +
Sbjct: 1661 SYSPTSPSYSPTS 1673
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 1594 PTSPSYSPTS-PSYSATSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1651
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 1652 SPSYSPTS 1659
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 1622 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1679
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 1680 SPSYSPTS 1687
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 1636 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1693
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 1694 SPSYSPTS 1701
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 1650 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1707
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 1708 SPSYSPTS 1715
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 1664 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1721
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 1722 SPSYSPTS 1729
Score = 27.5 bits (58), Expect = 1.6
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 1678 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1735
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 1736 SPSYSPTS 1743
Score = 26.6 bits (56), Expect = 2.7
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSPV 352
P+S Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 1573 PSSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPT 1630
Query: 351 L-SY*PAT 331
SY P +
Sbjct: 1631 SPSYSPTS 1638
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/59 (32%), Positives = 24/59 (40%)
Frame = -1
Query: 531 PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPPQCSGMCPFIRPTSQAFFTTGHGYSP 355
PTS Y+ P + S S S + P P S P PTS ++ T YSP
Sbjct: 1692 PTSPSYSPTS-PSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 473 RSKYRPRTLLNLDLRNVLECVRSLGQLPKPSLQR 372
RS + + NLDL V+ C+ L +PK LQR
Sbjct: 523 RSAWDLLSFTNLDLFCVISCIPKLKDIPKRVLQR 556
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 422 EHCGGLGLGVFEACIL 469
EHC GLG + AC+L
Sbjct: 1059 EHCSGLGSSITRACVL 1074
>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 27.1 bits (57), Expect = 2.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -1
Query: 561 LFPAIMMGV*PTSVMYTAAMIPEHP*ASSSLKIQASNTPKPRPP--QCSGMCPFI-RPTS 391
+F +++G P +T ++ P+H + A T P+PP + + P + +
Sbjct: 140 VFDLLLLGCGPDG--HTCSLFPDHEVLQEDVAWVAPVTDSPKPPKDRITLTLPVVTHAQA 197
Query: 390 QAFFTTGHGYSPVL 349
AF TTG G +L
Sbjct: 198 IAFVTTGAGKKDIL 211
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 388 SLLYNGPRVLPRLIILTRHRNDFILRE 308
S + NG RVLP I RH +I+RE
Sbjct: 12 STMRNGARVLPPEAISKRHIGPYIIRE 38
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 482 PAPRSKYRPRTLLNLDLRNVLECVRSLGQLPKPS 381
P+P S+ RP T LN R +E + Q P P+
Sbjct: 48 PSPNSECRPLTPLNSPFRRTVEGDTANLQAPSPT 81
>SPBC16A3.01 |spn3|SPBC543.01c|septin Spn3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Frame = +2
Query: 239 IPTTGFCFELTDEQKALQELARKF---------TKDEIIPVAGQYDKTGEYPWPVVK 382
IP F +++ ++++A+ L+++ + D +I + GQ + YPW VV+
Sbjct: 226 IPVYDFPYDIEEDEEAIINLSQQLRATIPFAIVSSDRLIEMNGQTVRGRAYPWGVVE 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,750
Number of Sequences: 5004
Number of extensions: 45008
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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