BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_B04
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    26   2.9  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    25   5.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.7  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   8.9  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   8.9  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   8.9  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   8.9  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   8.9  

>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = -1

Query: 509 VVEHVVQSATNSVEIGNLRNAGHVLSSESLCAEVMVIIVEQVDFASGGQLVTETRDVSVC 330
           V+ + V ++ +   + N R      +S+  CA   +I+  Q+D  +  + V+  R +  C
Sbjct: 85  VIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAVSLHRALDYC 144

Query: 329 KSR 321
           KS+
Sbjct: 145 KSK 147


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 171 DGTSGAIVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTNTHIPG 350
           D +SGA++ V  T     +    GS+  T+ +     T+G   + V     T+T T I G
Sbjct: 792 DTSSGAVIVVEPTAGTVTETIVSGSIPFTSTIPAQGTTSG-TVEVVEPTAGTVTETIISG 850


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -1

Query: 452 NAGHVLSSESLCAEVMVIIVEQVDFASGGQLVTETRDVSVCKSRSVSIDIVVCQSSCSGS 273
           N+GH  +S S+ +  + +      ++S       + DVSV  S   S DIV      S +
Sbjct: 139 NSGHASASTSIPSTAITVTANSTIYSSATSSFPYSTDVSV--STGTSTDIVTLPPPASST 196


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 285 AGLAYDNVNGHGATLTNTHIPG 350
           A  A DN+   GA+L + H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 390 FHNDNHDLSAKAFATKNMPSIPQVPDFNTVGGGLDY 497
           F  DN D S+++ A       P +PDF     GL +
Sbjct: 786 FQKDNSDSSSESSADIFQDVFPSMPDFRGGDRGLSH 821


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +1

Query: 61  TCSLKSLATTSNSMMISRSSGATPGCAGKRVLSLSTLTVPQ 183
           +C+L  L +T  ++ +S+ +     C  K + S +  T+P+
Sbjct: 78  SCTLLQLLSTLENLQLSQVNRIKSRCGSKVLKSTTKFTIPK 118


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 252  LTNQMKLGAATAGLAYDNVNGHGATLTNTHIPGFGDKL 365
            +T+  +  A    LA  N+ G  + + +TH+PG G  +
Sbjct: 922  ITDLKQYCATEMNLANRNMGGRLSQIISTHLPGDGQSV 959


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +3

Query: 348 GFGDKLTAAGKVNLFHNDNHDLSAKAFATKNMPSIPQV 461
           GF D +T  GK  L     + L   A    ++PS P +
Sbjct: 396 GFNDTVTNLGKKGLKDGTTNTLQIPAVRLPSLPSSPTI 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,795
Number of Sequences: 5004
Number of extensions: 43380
Number of successful extensions: 104
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)