Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_C10_e75_06.seq
         (1560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    29   1.3  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   9.3  

>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +2

Query: 173 ITTINVCLIVSQAADLVRIFTE-----FSNHVSFMITDII-LYISLLAAFFWLNSFG 325
           I+++NV L+     D  ++ TE       N+VSFM+  II L +  +  F W+  FG
Sbjct: 245 ISSVNVALMKDDVGDAEKLPTENWFDFICNYVSFMVGSIIFLVVYWIGIFIWI-GFG 300


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 136 KIYYSNN*V*YHCNCMECSLVPNYLQ 59
           K+ Y  + + Y C C+ C+L  NY Q
Sbjct: 147 KLVYIGSLIIYVCFCISCALARNYAQ 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,085
Number of Sequences: 5004
Number of extensions: 49089
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 878103082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)