Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40120
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 136 1e-32
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 136 1e-32
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 136 1e-32
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.84
07_01_0968 - 8111340-8112067,8112496-8112566,8112663-8112837,811... 29 2.6
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 3.4
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 4.5
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 28 5.9
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 5.9
05_01_0203 + 1459600-1460010 28 7.8
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 136 bits (330), Expect = 1e-32
Identities = 62/86 (72%), Positives = 71/86 (82%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+ QR
Sbjct: 25 LKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISILMQR 84
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
+ VDGK TD TYPAGFMDVVSI +
Sbjct: 85 HVMVDGKVRTDKTYPAGFMDVVSIAK 110
Score = 116 bits (278), Expect = 2e-26
Identities = 52/88 (59%), Positives = 66/88 (75%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+ G TIRY DPL
Sbjct: 110 KTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYPDPL 169
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
IK ND+I++D+ T KI+DFIKF+ G V
Sbjct: 170 IKANDTIKIDLETNKIVDFIKFDVGNIV 197
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 503 VWNLCMITGCRNLXRVGTIVFRERHSGSFD 592
V N+ M+TG RN RVG I RE+H GSF+
Sbjct: 193 VGNIVMVTGGRNTGRVGVIKSREKHKGSFE 222
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 136 bits (330), Expect = 1e-32
Identities = 61/86 (70%), Positives = 72/86 (83%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
+ VDGK TD TYPAGFMDV+SI +
Sbjct: 69 HVLVDGKVRTDKTYPAGFMDVISIPK 94
Score = 112 bits (269), Expect = 3e-25
Identities = 49/88 (55%), Positives = 65/88 (73%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+ G TIRY DP+
Sbjct: 94 KTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPI 153
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
IK ND+I++D+ T KI+DFIKF+ G V
Sbjct: 154 IKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 503 VWNLCMITGCRNLXRVGTIVFRERHSGSFD 592
V N+ M+TG RN RVG I RE+H GSF+
Sbjct: 177 VGNVVMVTGGRNTGRVGVIKNREKHKGSFE 206
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 136 bits (330), Expect = 1e-32
Identities = 61/86 (70%), Positives = 72/86 (83%)
Frame = +1
Query: 1 LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 180
LKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+ QR
Sbjct: 9 LKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQR 68
Query: 181 LIKVDGKDWTDPTYPAGFMDVVSIER 258
+ VDGK TD TYPAGFMDV+SI +
Sbjct: 69 HVLVDGKVRTDKTYPAGFMDVISIPK 94
Score = 113 bits (271), Expect = 2e-25
Identities = 50/88 (56%), Positives = 65/88 (73%)
Frame = +3
Query: 255 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHXGCTIRYXDPL 434
KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+ G TIRY DPL
Sbjct: 94 KTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPL 153
Query: 435 IKVNDSIQLDIATTKIMDFIKFESGTCV 518
IK ND+I++D+ T KI+DFIKF+ G V
Sbjct: 154 IKANDTIKIDLETNKIVDFIKFDVGNVV 181
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +2
Query: 503 VWNLCMITGCRNLXRVGTIVFRERHSGSFD 592
V N+ M+TG RN RVG I RE+H GSF+
Sbjct: 177 VGNVVMVTGGRNTGRVGVIKNREKHKGSFE 206
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 121 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 20
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>07_01_0968 -
8111340-8112067,8112496-8112566,8112663-8112837,
8112991-8113054,8113351-8113671,8114413-8114438,
8114495-8114573
Length = 487
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = +3
Query: 18 SQSMDVGQTWRCVCTETVNRS--PQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHKG 191
S S W C E + S P++ L P P +VC+D P P+K
Sbjct: 414 SLSSKSADPWNCSLIEGFSNSVAPEICEQLRPSPGP---GQVCYDGNSYPVPAAQQPYKS 470
Query: 192 *WERLD*PYL 221
RL P+L
Sbjct: 471 GATRLQNPFL 480
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 134 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 6
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 4.5
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +3
Query: 18 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 182
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 550 HTXQVTASSDHTQVPDSN 497
HT QV++SS H Q PD N
Sbjct: 865 HTSQVSSSSPHNQQPDEN 882
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 270 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 374
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>05_01_0203 + 1459600-1460010
Length = 136
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 558 SCSARDIPXPSTFVAHSKDS 617
+CS +P P T V HSKDS
Sbjct: 41 TCSMIKVPNPHTVVTHSKDS 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,668,393
Number of Sequences: 37544
Number of extensions: 373420
Number of successful extensions: 1019
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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