Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40097
         (845 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0038 + 31227349-31227621,31228120-31228212,31229439-312295...    29   4.7  
01_01_1149 - 9134390-9134600,9134732-9134790,9135650-9135724,913...    29   6.2  

>03_06_0038 +
           31227349-31227621,31228120-31228212,31229439-31229575,
           31229953-31231030,31231757-31232374
          Length = 732

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 6   NGGAATMPSRPGPHVSKLLIHVHK*TQKYQSTMS 107
           NGGAA +P  PGP    +L H+H   +   +TMS
Sbjct: 246 NGGAARLP--PGPPAVPILGHLHLVKKPMHATMS 277


>01_01_1149 -
           9134390-9134600,9134732-9134790,9135650-9135724,
           9135815-9135934,9136012-9136183,9136277-9136335,
           9136516-9136572,9136900-9136998,9137088-9137114,
           9137607-9137649,9137779-9138023
          Length = 388

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 326 SLFTDRTPASYASLVLLKNQYSIVASMNLFTSL 228
           SL ++ +PA YA+  L+KN  S+V  M+L   +
Sbjct: 212 SLVSEFSPAQYAASPLIKNSLSVVPWMSLLLGM 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,995,754
Number of Sequences: 37544
Number of extensions: 433669
Number of successful extensions: 728
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)