Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40080
         (705 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0674 + 19788198-19789817                                         30   2.1  
07_01_0670 + 5030971-5032698                                           29   3.6  
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123...    29   4.8  
03_02_0603 - 9786761-9786856,9787189-9787269,9787366-9787431,978...    28   6.3  
03_02_0354 + 7760124-7761407,7762802-7762858                           28   8.3  

>10_08_0674 + 19788198-19789817
          Length = 539

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = -3

Query: 433 LSTSMQSFNLIINLLCHAFWGNFHRCTNGFSK*R--------WSRF*CFYPGTCAWTCCK 278
           L+++  + NL+I LL   +    HR T GFS  R        W R       +CA  C +
Sbjct: 236 LASAWANLNLVIFLLAFVYVSGVHRDTGGFSLPRKMFKDVDGWVRLVRLAAESCASVCLE 295

Query: 277 W 275
           W
Sbjct: 296 W 296


>07_01_0670 + 5030971-5032698
          Length = 575

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 390 KRFMMRLNDCIDVDSCAWPTALLHHAHH-PVDPQETVHRLISAHCSQTCS 536
           +R +  ++  I VD    P A  +++ + PVD ++T +    A+ S TCS
Sbjct: 63  RRLLNAVDPYITVDISECPAAARYYSRYDPVDARDTTYDEAKAYLSATCS 112


>01_06_0433 -
           29311749-29311859,29311958-29312116,29312208-29312315,
           29312449-29312531,29312617-29312786,29312833-29312903,
           29313170-29313302,29313483-29313749,29313865-29313969,
           29314053-29314144,29314263-29314363,29314426-29314552,
           29315025-29315140,29315222-29315291,29315476-29315685
          Length = 640

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = -3

Query: 223 FLFNVAHAIFFLRPTKSSGLRICQRICFNY---EYKKMKNNIKP 101
           F F ++ A+FFL+  K     +  R   NY   EYK M N + P
Sbjct: 250 FFFVISWAVFFLQFWKRKNSAVLARWGINYSFSEYKTMGNELDP 293


>03_02_0603 -
           9786761-9786856,9787189-9787269,9787366-9787431,
           9788056-9788610,9788693-9788857,9789110-9789217,
           9789905-9790109,9790347-9790434,9791590-9792109
          Length = 627

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 380 RMAQEIYDEIKRLHRRGQLRL 442
           ++AQEIY+EIK+  + G L+L
Sbjct: 332 KLAQEIYEEIKKKEQNGLLKL 352


>03_02_0354 + 7760124-7761407,7762802-7762858
          Length = 446

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 320 ESRPSSFGESVSAPVKITPERMAQEI 397
           E      GES  APVK  P R+ QE+
Sbjct: 19  EEESKGKGESTGAPVKYLPARLRQEV 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,674,194
Number of Sequences: 37544
Number of extensions: 386490
Number of successful extensions: 1096
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)