Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40036
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0196 - 15374814-15374997,15375304-15375547,15376035-153762...    40   0.002
02_04_0016 + 18930395-18930581,18930640-18930668                       28   8.7  

>12_02_0196 -
           15374814-15374997,15375304-15375547,15376035-15376237,
           15377275-15377502,15377674-15377819,15378020-15378233,
           15378410-15378543,15378986-15379135,15379892-15380155,
           15380962-15381051
          Length = 618

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/46 (43%), Positives = 29/46 (63%)
 Frame = +3

Query: 6   IDLVVGMMAEKHLPGSLLGPTATSLFKEQLWRTRIADRYFYSHVNE 143
           +DL+VG+MAEK + G  +  TA ++F     R   ADR+F S+ NE
Sbjct: 527 LDLLVGLMAEKKIKGFAISETAFNIFILMASRRLEADRFFTSNFNE 572


>02_04_0016 + 18930395-18930581,18930640-18930668
          Length = 71

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 689 TPRFPRPKIS*VDIISTWISQP 624
           TP  PRP ++ +D+ S WIS P
Sbjct: 9   TPGHPRPGLAALDLDSPWISMP 30


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,706,173
Number of Sequences: 37544
Number of extensions: 525443
Number of successful extensions: 1248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)