Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40026
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1148 - 24363952-24365086,24365178-24365361,24365438-243654...    29   3.7  
03_05_0001 - 19386264-19386284,19386446-19386517,19386614-193873...    29   6.4  
02_05_1114 + 34218218-34218463,34219143-34219179,34219450-342196...    29   6.4  

>07_03_1148 -
           24363952-24365086,24365178-24365361,24365438-24365474,
           24365585-24365818
          Length = 529

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 567 NEWNQINDFCRKTNLKLVFSLNA 635
           N W+++N F ++TN  + F LNA
Sbjct: 139 NRWDELNVFFKRTNTTVTFGLNA 161


>03_05_0001 - 19386264-19386284,19386446-19386517,19386614-19387357,
            19387454-19388884,19388953-19389118,19392035-19392114,
            19392393-19392462,19392550-19392761,19392837-19392890,
            19393471-19393623,19393715-19393930,19394029-19394248,
            19394332-19394399,19394510-19394643,19394755-19394854,
            19394943-19395421,19395506-19395699,19396270-19396355,
            19396364-19396444,19396842-19397023,19397305-19397346,
            19398247-19398558,19399374-19399434,19399435-19399617,
            19399744-19399863,19400380-19401051,19402597-19402668,
            19402742-19402865,19403563-19403651,19405023-19405097
          Length = 2170

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 184  ILLQRGYARIICKIQRRCKVLCYDNEN-XEDIKLISEDFL 300
            +L + G ARI+ K+ + C  +CY  +N   D  + S D L
Sbjct: 1241 LLCKMGVARILRKLLQECSSMCYMEDNMISDKGVYSNDLL 1280


>02_05_1114 +
           34218218-34218463,34219143-34219179,34219450-34219633,
           34219725-34219873,34220271-34220504,34220592-34220781,
           34220863-34220988,34221386-34221485,34221598-34221957
          Length = 541

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +3

Query: 567 NEWNQINDFCRKTNLKLVFSLNA 635
           + W+++N F +K+  K++F LNA
Sbjct: 143 HRWDELNAFFQKSGAKIIFGLNA 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,106,037
Number of Sequences: 37544
Number of extensions: 435642
Number of successful extensions: 804
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)