Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40024
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0787 + 11180794-11180958,11181051-11181230,11181396-111816...    29   3.6  
11_01_0361 + 2772193-2772334,2773457-2773587,2773872-2773985,277...    29   4.8  
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178           29   4.8  

>03_02_0787 +
           11180794-11180958,11181051-11181230,11181396-11181611,
           11181693-11181875,11182013-11182234,11182434-11182550,
           11182682-11182825,11183198-11183299,11183762-11183830,
           11184283-11184516
          Length = 543

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 459 FTKQDQRLLDGL-KFFNTLETQKVKKIEESLNH 554
           F+K+ Q  LD + + F+  + ++VKKIE++ NH
Sbjct: 134 FSKEAQLFLDAIIQDFSVADAKEVKKIEKTTNH 166


>11_01_0361 +
           2772193-2772334,2773457-2773587,2773872-2773985,
           2774303-2774459,2774577-2775000,2775238-2776030,
           2776182-2776241,2776952-2777593
          Length = 820

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +2

Query: 521 EGQKDRRE---LKSLMKRRIYNKERKIKYSTRKLVVEE 625
           +G + RRE   LK  MKR+    E+K++Y +RK + E+
Sbjct: 562 DGDRSRREAALLKFRMKRKDRCFEKKVRYHSRKKLAEQ 599


>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
          Length = 455

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -2

Query: 644 YRILHSFLLPPIFLWNI*FSSLCCKFVSSSMI*ALFYLFDLLCLQCIKE 498
           Y+   SF+L   F W+   S +  KFV+ S I  L Y+ D+L     KE
Sbjct: 179 YKRFDSFMLSHGFKWSEFDSCVYIKFVNGSPIYLLLYVDDMLIAAKSKE 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,557,570
Number of Sequences: 37544
Number of extensions: 225678
Number of successful extensions: 553
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)