Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30112
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0269 + 16265191-16265472,16265574-16266149                       29   2.1  
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029     28   3.7  
09_02_0338 + 7426999-7428322,7428390-7428646                           28   4.8  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     27   6.4  
05_03_0618 - 16262826-16263097,16263111-16263183                       27   6.4  
01_01_0521 - 3826257-3826616,3826758-3826918,3826992-3827049,382...    27   8.5  

>09_04_0269 + 16265191-16265472,16265574-16266149
          Length = 285

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = -2

Query: 237 WEPL---MESTDPQCHILQHRRPRLPL 166
           W PL   M  T P C +L++ RPRLPL
Sbjct: 150 WVPLVGEMARTGPLCLLLENPRPRLPL 176


>01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029
          Length = 80

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 295 CLCSSGCASCRYSRELKPSMGAT 227
           C C +GC  C+YS E++P+   T
Sbjct: 14  CQCGNGCGGCKYS-EVEPTTTTT 35


>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = -2

Query: 228 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 88
           LM      C  L HR P L +  L A        L+AI   KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
 Frame = +1

Query: 262 SGRKHSRCCTSILRKFSGR------QHCVTVDCCC 348
           +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 24  AGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>05_03_0618 - 16262826-16263097,16263111-16263183
          Length = 114

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 113 RIARREQKLKEHGASSCISGKRGRRC 190
           R+ARR + LK   +  C  G R RRC
Sbjct: 11  RMARRRRWLKRRRSGHCRCGLRSRRC 36


>01_01_0521 -
           3826257-3826616,3826758-3826918,3826992-3827049,
           3827426-3827497,3827582-3827639,3828231-3828347,
           3828630-3828782,3829182-3829346,3829814-3830132,
           3830276-3830780
          Length = 655

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 295 CLCSSGCASCRYSRELKPSMGATNGVNRPPVP 200
           C+   GC       EL+PS+ A  G  R P P
Sbjct: 71  CMFEDGCTFAHGDEELRPSLTACAGGWRKPSP 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,394
Number of Sequences: 37544
Number of extensions: 243287
Number of successful extensions: 554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)