Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30109
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1479 + 30428488-30428502,30428619-30428715,30429627-304299... 99 5e-21
03_01_0223 - 1766292-1766442,1767621-1767676,1767798-1767891,176... 99 5e-21
02_01_0111 - 825369-825428,825778-826380,826467-827267,827716-82... 99 5e-21
12_02_0627 + 21354165-21354288,21355770-21356248,21356752-21356778 39 0.005
12_02_0624 + 21325082-21325292,21325679-21325896,21327462-213279... 33 0.20
12_02_0623 + 21319088-21319199,21319508-21319725,21321172-213216... 32 0.61
03_05_0671 + 26608953-26609671,26609775-26610495 29 3.3
12_02_0663 + 21653536-21653541,21654027-21654212,21654316-216543... 29 4.3
11_06_0198 - 21158350-21159528 29 4.3
09_02_0286 - 6898041-6898144,6898881-6899005,6899158-6899207,689... 29 4.3
07_03_0602 + 19881998-19882217,19882303-19882496,19883719-198840... 28 7.5
08_02_0379 - 16506775-16506950,16507037-16507096,16507187-165073... 28 9.9
>06_03_1479 +
30428488-30428502,30428619-30428715,30429627-30429904,
30430256-30431032,30431254-30431343,30431538-30431605,
30431696-30431789,30431902-30431961
Length = 492
Score = 98.7 bits (235), Expect = 5e-21
Identities = 43/74 (58%), Positives = 57/74 (77%)
Frame = +1
Query: 31 FNPFDLTKIWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGIEPSPDKMLQG 210
F+P D+TK WP PL PVG++VL++N N+FAE EQ+AF P+ +VPGI S DK+LQ
Sbjct: 284 FDPLDVTKTWPEDIIPLQPVGRMVLNKNIDNFFAENEQLAFCPAIIVPGIHYSDDKLLQT 343
Query: 211 RLFAYSDTHRHRLG 252
R+F+Y+DT RHRLG
Sbjct: 344 RIFSYADTQRHRLG 357
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = +3
Query: 255 NYLQIPVNCPYKVAVSNYQRDGPQAIHNQDDCPNYFPNSFSGPQECPRAQRLQPRYNVGG 434
NYL +PVN P K A N DG ++D+ NYFP+ F + + + PR G
Sbjct: 359 NYLMLPVNAP-KCAYHNNHHDGSMNFMHRDEEVNYFPSRFDAARHAEKVP-IPPRVLTG- 415
Query: 435 DVDRYDSGQTEDNFSQATALYK 500
E+NF QA Y+
Sbjct: 416 -CREKCVIDKENNFQQAGERYR 436
>03_01_0223 -
1766292-1766442,1767621-1767676,1767798-1767891,
1768004-1768071,1768441-1769585,1770072-1770168,
1770265-1770279
Length = 541
Score = 98.7 bits (235), Expect = 5e-21
Identities = 44/74 (59%), Positives = 56/74 (75%)
Frame = +1
Query: 31 FNPFDLTKIWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGIEPSPDKMLQG 210
F+P D+TK WP PL PVG++VL+RN N+F+E EQ+AF P +VPGI S DK+LQ
Sbjct: 284 FDPLDVTKTWPEDIVPLQPVGRMVLNRNIDNFFSENEQLAFCPGIIVPGIYYSDDKLLQT 343
Query: 211 RLFAYSDTHRHRLG 252
R+F+YSDT RHRLG
Sbjct: 344 RIFSYSDTQRHRLG 357
Score = 33.1 bits (72), Expect = 0.26
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +3
Query: 255 NYLQIPVNCPYKVAVSNYQRDGPQAIHNQDDCPNYFPNSFSGPQECPR 398
NYL +P N P K A N DG ++D+ +YFP+ + + PR
Sbjct: 359 NYLLLPPNAP-KCAHHNNHYDGFMNFMHRDEEVDYFPSRYDPAKHAPR 405
>02_01_0111 -
825369-825428,825778-826380,826467-827267,827716-827766
Length = 504
Score = 98.7 bits (235), Expect = 5e-21
Identities = 47/80 (58%), Positives = 57/80 (71%)
Frame = +1
Query: 13 QAESCKFNPFDLTKIWPHAEYPLIPVGKLVLDRNPKNYFAEVEQIAFSPSNLVPGIEPSP 192
+ E F+P D TK WP E PL PVG+LVL+RN N+F E EQ+AF P +VPGI S
Sbjct: 290 EEERFDFDPLDDTKTWPEDEVPLRPVGRLVLNRNVDNFFNENEQLAFGPGLVVPGIYYSD 349
Query: 193 DKMLQGRLFAYSDTHRHRLG 252
DKMLQ R+FAY+DT R+RLG
Sbjct: 350 DKMLQCRVFAYADTQRYRLG 369
Score = 33.5 bits (73), Expect = 0.20
Identities = 20/59 (33%), Positives = 30/59 (50%)
Frame = +3
Query: 255 NYLQIPVNCPYKVAVSNYQRDGPQAIHNQDDCPNYFPNSFSGPQECPRAQRLQPRYNVG 431
NYL +PVN P K A N DG ++D+ +Y+P+ + + P + PR VG
Sbjct: 371 NYLMLPVNAP-KCAHHNNHYDGAMNFMHRDEEVDYYPSRHAPLRHAPPTP-ITPRPVVG 427
>12_02_0627 + 21354165-21354288,21355770-21356248,21356752-21356778
Length = 209
Score = 38.7 bits (86), Expect = 0.005
Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Frame = +1
Query: 109 RNPKNYFAEVEQIAFSPSNLVPGIEPSPDKMLQGRLFAYSDT-HRHRLGATTSKFL*IVH 285
R P + ++ I F V G PS DK+L + F Y+ T RHR G+ S L
Sbjct: 41 RRPSHAILLMDPIEFEIELGVKGTSPSEDKILSAKAFGYNGTAQRHRCGSLRSMMLSGAR 100
Query: 286 TKLLFPTTSVMDLKLFTIKTTALTISPTLFLDHKNVHVLSV 408
+KL F + TIK +T T F H S+
Sbjct: 101 SKLEFKYAHIPVALEATIK-VRITGGSTDFCGKFIAHTASI 140
>12_02_0624 +
21325082-21325292,21325679-21325896,21327462-21327959,
21328008-21328049
Length = 322
Score = 33.5 bits (73), Expect = 0.20
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 115 PKNYFAEVEQIAFSPSNLVPGIEPSPDKMLQGRLFAYSDT-HRHRLGATTSKFL 273
P ++ I F V G PS DK+L F Y+ T RHR G+ S L
Sbjct: 152 PSRAILLMDPIEFEIELRVKGTSPSEDKILSAEAFGYNGTAQRHRCGSLRSMLL 205
>12_02_0623 +
21319088-21319199,21319508-21319725,21321172-21321672,
21321721-21321756
Length = 288
Score = 31.9 bits (69), Expect = 0.61
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 169 VPGIEPSPDKMLQGRLFAYSDT-HRHRLGATTSKFL 273
V G PS DK+L F Y+ T RHR G+ S L
Sbjct: 137 VKGTSPSEDKILSAEAFGYNGTAQRHRCGSLRSMML 172
>03_05_0671 + 26608953-26609671,26609775-26610495
Length = 479
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/54 (27%), Positives = 20/54 (37%)
Frame = +3
Query: 309 QRDGPQAIHNQDDCPNYFPNSFSGPQECPRAQRLQPRYNVGGDVDRYDSGQTED 470
Q DGP +H D C NY N E + Y D +++ ED
Sbjct: 319 QNDGPWTLHYFDYCENYDQNDIDAHYEGYINEDYNEEYIAAQDCKHFEAASYED 372
>12_02_0663 +
21653536-21653541,21654027-21654212,21654316-21654393,
21654581-21654694,21654799-21654865,21654954-21655015,
21655123-21655262,21655552-21655678,21655758-21655872,
21656111-21656199,21656593-21656733,21657067-21657192,
21657655-21657714,21658285-21658443
Length = 489
Score = 29.1 bits (62), Expect = 4.3
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = -2
Query: 314 TLVVGNSNFVWTIYRNLEVVAPSLWRCVSL*ANSLPCNILSGDGSIPGTKLDGLKAICST 135
TLV+ S FVW++ LE AP +L +S + SG + P T +GL ++
Sbjct: 303 TLVLNMSTFVWSVVTGLEGRAPPTSEIYAL-KSSRKSGVPSGQLNEPET--NGLASVAEN 359
Query: 134 SAK 126
S++
Sbjct: 360 SSR 362
>11_06_0198 - 21158350-21159528
Length = 392
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Frame = -1
Query: 480 GRSCPQSGHYHTGLHLRRHCIEVANAEH--VDILVVQKKSWGNS*GSRLDCE*LEVHHAG 307
G C + +H ++ CI+ H D +V ++ G+ R C+ HH
Sbjct: 211 GDRCRKQCQHHHDQWKKQQCIQDCRYHHRQEDDVVEEEDGHGDQ-QCRKQCQ----HHHD 265
Query: 306 SWKQQLCMDNLQEF 265
WK+Q CM + +++
Sbjct: 266 QWKKQQCMQDCRQW 279
>09_02_0286 -
6898041-6898144,6898881-6899005,6899158-6899207,
6899245-6899386,6899951-6900020,6900077-6900216,
6900291-6900365,6901083-6904723
Length = 1448
Score = 29.1 bits (62), Expect = 4.3
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = -2
Query: 386 LWSRKRVGEIVRAVVLIVNSLRSITLVVGNSNFVWTIYRNLEVVAPSLWRCVSL*ANSLP 207
+W+ GEI VL N TLV+ +NF +I R++ +W VSL N L
Sbjct: 508 MWANGLSGEIPD--VLCSNGTTLETLVISYNNFTGSIPRSITKCVNLIW--VSLSGNRLT 563
Query: 206 CNILSGDGSI 177
++ G G +
Sbjct: 564 GSVPGGFGKL 573
>07_03_0602 +
19881998-19882217,19882303-19882496,19883719-19884039,
19885016-19885244,19885554-19885653,19886413-19886539,
19886603-19886780,19886859-19886917,19887082-19887568,
19887682-19887836,19887930-19888100,19888181-19888270,
19888714-19888872,19888940-19889223,19889435-19889498
Length = 945
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Frame = +3
Query: 240 P*TWCNYLQIPVNCPYKVAVSNYQRDGPQAIHNQDD---CPNYFPNSFSGPQECPRAQRL 410
P T C++ + NC + S ++ A N+ D PN + FSG + P +
Sbjct: 402 PTTCCSFSNLAANCVKHLKHSRQDQENSSAQANESDRSTVPNEEDDVFSGLDDVP----V 457
Query: 411 QPRYNVGGDVDRYD 452
+ R + ++DR D
Sbjct: 458 EARTTLDNNIDRDD 471
>08_02_0379 -
16506775-16506950,16507037-16507096,16507187-16507375,
16508131-16508224,16508276-16508300,16508690-16508796,
16508903-16509021,16510520-16510658
Length = 302
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 37 PFDLTKIWPHAEYPLIPVGKLVLDRNPKN 123
PFD IWPHA + L+ + + N N
Sbjct: 240 PFDADAIWPHAHFQLLAESRSNGNENSHN 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,248,579
Number of Sequences: 37544
Number of extensions: 451402
Number of successful extensions: 1157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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