Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30106
         (762 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239...    30   1.7  
01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951           30   2.3  
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521...    28   7.1  
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934...    28   7.1  
11_06_0409 - 23217558-23218355,23218808-23219297,23219515-232195...    28   9.3  
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426...    28   9.3  
01_03_0046 - 11937619-11938260                                         28   9.3  

>06_02_0298 +
           13921310-13921834,13921923-13922063,13923601-13923951,
           13924071-13924130,13924261-13924380,13924569-13924718
          Length = 448

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 733 ASKTRVKSATALIPARSCRPNGKQSTSPK--TRHYGSSRSINGAFRYHKHWSP 581
           A +  V    A + A+S  P+   S+S +  +RH  SS+S +G  +    W+P
Sbjct: 128 AGEANVDDGAAAVEAKSSSPSSTTSSSQEAESRHKSSSKSSHGKKKAKVDWTP 180


>01_01_0712 - 5509748-5509990,5510099-5510554,5510959-5511951
          Length = 563

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 688 RSCRPNGKQSTSPKTRHYGSSRSINGAFRYHKHWSPSSPNPSL-ATKGSTSKLTHRHSPL 512
           R  R + ++ TSP  +  GS RSI G   + +  S  S +P L +T  S+ K        
Sbjct: 161 REARASSRRFTSPPPKRRGSERSIYGK-SFDRQLSDMSQSPDLCSTPVSSDKHKSLKDSS 219

Query: 511 SSRRIFSVG 485
            +RR F  G
Sbjct: 220 WTRRYFDNG 228


>06_03_1117 +
           27750291-27750338,27751360-27751812,27751987-27752161,
           27752227-27752551,27752705-27752786,27752820-27752889,
           27753341-27753420,27753514-27753750
          Length = 489

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -3

Query: 319 EAVARVCLIELRAGHSTVK 263
           EAV R+CL+EL  G  T+K
Sbjct: 248 EAVCRICLVELNEGGETLK 266


>05_03_0184 +
           9339939-9340896,9341003-9341083,9341166-9341383,
           9341796-9342019,9342409-9343096
          Length = 722

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -3

Query: 631 SSRSINGAFRYHKHWSPSSPNPSLATKGSTSKLTHRHSPLS 509
           SS SI+ A +   H S +SP+PS A + ST    HR S L+
Sbjct: 64  SSLSISEADKSPSHSSMASPSPSRAVE-STGSPVHRGSQLT 103


>11_06_0409 -
           23217558-23218355,23218808-23219297,23219515-23219591,
           23219624-23219863,23220338-23220481,23220522-23220582,
           23220875-23220934,23221097-23221192,23221306-23221398,
           23221494-23221585
          Length = 716

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -3

Query: 304 VCLIELRAGHSTVKSLRFLCVASLQNPVGREIRSDPPEKEMVGGVLSP 161
           + L++L  GHS  KSLR      L +    + +S   ++E++ G++ P
Sbjct: 609 IILLQLVTGHSDAKSLRDFVAQKLGDDSEFQRKSILQKREILKGIVDP 656


>05_01_0512 -
           4259162-4259849,4260209-4260432,4260854-4261071,
           4261154-4261234,4261342-4262299
          Length = 722

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -3

Query: 631 SSRSINGAFRYHKHWSPSSPNPSLATKGSTSKLTHRHSPLS 509
           SS SI+ A +   H S +SP+PS A + ST    HR S L+
Sbjct: 64  SSLSISEADKSPSHSSMASPSPSQALE-STGSPVHRGSQLT 103


>01_03_0046 - 11937619-11938260
          Length = 213

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 90  KRPSLSPEGTATKTSGVRR*PRTQGERTPPTISFSGG 200
           K+P LS   TA  ++     P TQ +   P +S SGG
Sbjct: 29  KKPCLSDRSTAPPSAHFADAPETQTQTPTPPLSASGG 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,005,520
Number of Sequences: 37544
Number of extensions: 435031
Number of successful extensions: 1485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1484
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)