Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30103
(702 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0678 + 27207340-27207447,27207555-27207668,27209111-272093... 73 2e-13
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595... 70 2e-12
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259... 46 4e-10
02_02_0476 - 10751647-10753323 31 0.89
10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800 31 1.2
11_04_0153 + 14159820-14162417 30 1.5
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 29 3.6
05_05_0256 - 23647736-23648947 29 4.7
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 29 4.7
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037 28 6.2
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 28 6.2
03_06_0100 - 31647506-31647664,31647752-31647835,31647933-316480... 28 8.3
03_06_0036 + 31208993-31209391,31209616-31209693,31209881-312099... 28 8.3
>04_04_0678 +
27207340-27207447,27207555-27207668,27209111-27209332,
27209407-27209481,27209569-27209685,27210145-27210395,
27210686-27210761,27210862-27210948,27211037-27211222
Length = 411
Score = 72.9 bits (171), Expect = 2e-13
Identities = 29/57 (50%), Positives = 44/57 (77%)
Frame = +2
Query: 254 QDNAHRIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNL 424
++NA ++AK I EAAN PT P AD+IL + + ++PD+Y N+GGV VS+FEW++N+
Sbjct: 296 RENAPDVKAKFIIEAANHPTDPEADEILAKKGVTILPDIYANSGGVIVSYFEWVQNI 352
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 1 VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEEYRIENG 153
+QGFGNVG R + G I + + GSI N +G++ AL ++R E G
Sbjct: 211 IQGFGNVGSWAARIIHEKGGKVIALGDVTGSIRNKNGLDIPALMKHRNEGG 261
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 165 FPGAKAYEGENMLYEKCDILVPAAIEQVINR 257
F A+ + +L +CD+L+P A+ V+NR
Sbjct: 266 FHDAEVMDSSELLVHECDVLIPCALGGVLNR 296
>02_05_0144 +
26258841-26258948,26259099-26259212,26259335-26259556,
26259660-26259734,26259827-26259943,26260046-26260296,
26260833-26260908,26261045-26261131,26261216-26261401
Length = 411
Score = 69.7 bits (163), Expect = 2e-12
Identities = 27/57 (47%), Positives = 43/57 (75%)
Frame = +2
Query: 254 QDNAHRIQAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNL 424
++NA ++A+ I E AN PT AD+IL + ++V+PD+Y N+GGV VS+FEW++N+
Sbjct: 296 RENAAEVKARFIIEGANHPTDTEADEILAKKGVIVLPDIYANSGGVVVSYFEWVQNI 352
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 1 VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEEYRIENGT 156
+QG GNVG + + + G + V + G+I N GI+ AL ++R E G+
Sbjct: 211 IQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKSGIDIPALLKHRSEGGS 262
Score = 34.3 bits (75), Expect = 0.095
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 165 FPGAKAYEGENMLYEKCDILVPAAIEQVINRTTLTGSKLR 284
F GA+ + +L +CD+LVP A+ V+NR K R
Sbjct: 266 FYGAEVMDAAELLVHECDVLVPCALGGVLNRENAAEVKAR 305
>03_06_0282 -
32824950-32825135,32825247-32825505,32825651-32825901,
32826309-32826425,32826613-32826687,32826788-32827009,
32827396-32827509,32827694-32827801
Length = 443
Score = 46.0 bits (104), Expect(2) = 4e-10
Identities = 16/32 (50%), Positives = 27/32 (84%)
Frame = +2
Query: 329 KILIDRNILVIPDLYINAGGVTVSFFEWLKNL 424
+IL + +L++PD+ N+GGVTVS+FEW++N+
Sbjct: 353 QILSKKGVLILPDILANSGGVTVSYFEWVQNI 384
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 141 NRERYVVGFPGAKAYEGENMLYEKCDILVPAAIEQVINR 257
+ R + GF G A + ++L E+CD+L+PAA+ VIN+
Sbjct: 258 SENRGIKGFDGGDAIDPRSLLTEECDVLIPAALGGVINK 296
Score = 36.3 bits (80), Expect = 0.024
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 1 VQGFGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGINPKALEEYRIEN 150
+QGFGNVG + + AG I + + G++ N +G++ L ++ EN
Sbjct: 211 IQGFGNVGSWAAQLISEAGGKVIAISDVTGAVKNSNGLDIAKLMKHSSEN 260
Score = 35.9 bits (79), Expect(2) = 4e-10
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +2
Query: 254 QDNAHRIQAKIIAEAANGPTTPAADK 331
+DNA+ I+AK I EAAN PT P AD+
Sbjct: 296 KDNANEIKAKYIIEAANHPTDPEADE 321
>02_02_0476 - 10751647-10753323
Length = 558
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -1
Query: 603 HDVLLGGAGDSLLEGL*GSDGDAASHATEPPLRDSWTDS 487
H+V+ G G L+ G AA+ ATEPP+ D + ++
Sbjct: 313 HEVMFTGLGGGLVVSDNGEHASAAAPATEPPVHDVFLET 351
>10_08_0661 + 19656669-19656905,19657390-19657869,19659519-19659800
Length = 332
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +3
Query: 168 PGAKAYEGENMLYEKCDILVPAAIEQVINRTTLTGSKLRSLRRPPTVPPHL 320
P + +G ++ YE+ + AA +++ TGS+L SLR P V L
Sbjct: 35 PRVRLSDGRHLAYEESGVPKEAARYKIVFSHGFTGSRLDSLRASPEVAEEL 85
>11_04_0153 + 14159820-14162417
Length = 865
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 523 RVGGRIPVTPSESFQKRISGASEKDIVHSGL 615
R+GG I P ESFQ+R ++ D+ G+
Sbjct: 309 RIGGTIGYLPPESFQRRAMATAKSDVFSFGI 339
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 37 RYLVRAGATCIGVIEHDGSIYNPDGINPKALEEY 138
R LV AGA +G DG +G+ +ALEE+
Sbjct: 664 RVLVAAGAAEVGTHRSDGQRLRCEGLTEEALEEF 697
>05_05_0256 - 23647736-23648947
Length = 403
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +1
Query: 169 PALRPTKARTCFTRSATFLYPPPSNRS*TGQRSQDPS*DHCGGRQRSHHTCCRQDPHRSQ 348
P L A T +T + + S+ + G + + C GR+R T CR P R+
Sbjct: 330 PGLGSAPASTSWTTTESTTSSRSSSMAPDGATPAETAASGCWGRRR-RTTSCRSKPRRAT 388
Query: 349 HSR 357
H R
Sbjct: 389 HRR 391
>02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = -1
Query: 675 EVEPHGCLHDGPSGSLHGVVESGVHDVLLGGAGDS 571
E + H L DG SL V+ GVHDV LG DS
Sbjct: 999 EEDDHEVLQDG---SLPICVQDGVHDVKLGDTDDS 1030
>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
Length = 438
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +3
Query: 486 WNRSKSLS--AAVRSRGRPHPRHSLRVLPEE 572
WN + +S AAVRSR HP L++L E
Sbjct: 352 WNLKQEISTLAAVRSRNEIHPGSKLKILAAE 382
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 608 PDSTTPWRDPLGPS*RQP 661
P +TPWRDP S RQP
Sbjct: 10 PHDSTPWRDPSRASSRQP 27
>03_06_0100 -
31647506-31647664,31647752-31647835,31647933-31648089,
31648181-31648446,31648524-31648796,31648874-31648985,
31649112-31649331,31649476-31649899
Length = 564
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 10 FGNVGLHTCRYLVRAGATCIGVIEHDGSIYNPDGIN 117
F +G+H + AGAT GS+ P G+N
Sbjct: 270 FAPIGVHIAMIFIMAGATLSATGSFKGSVDVPQGLN 305
>03_06_0036 +
31208993-31209391,31209616-31209693,31209881-31209946,
31211556-31211621,31211815-31211865,31212635-31212928
Length = 317
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 153 YVVGFPGAKAYEGENML---YEKCDILVPAAIEQVINRTTLTGSKLRSLRRPPT 305
+++ F G Y G+++ Y D ++PA + Q + TT S + S+ PT
Sbjct: 67 HLLSFSGQDQYHGDDVFGLQYYGGDQVIPAVVPQKSSPTTECSSSVSSMSSSPT 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,008,194
Number of Sequences: 37544
Number of extensions: 447982
Number of successful extensions: 1432
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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