Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30102
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0168 + 28122429-28122650,28122651-28122725,28123066-281231...    28   8.8  
05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   8.8  

>05_07_0168 +
           28122429-28122650,28122651-28122725,28123066-28123122,
           28123248-28123411,28123672-28123806,28123908-28124010,
           28124165-28124264,28124348-28124556
          Length = 354

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +3

Query: 516 PDGFSFGYETDNGISAQSSGSLKKVDNIDVLAIQGQYEYSAPDGTPVKFTYTAD 677
           P  FSFGY T   +S  S   ++ ++ +D L    Q E     G  + F    D
Sbjct: 201 PFSFSFGYHTYLSVSDISEVRIEGLETLDYLDNLSQRERFTEQGDAITFESEVD 254


>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
 Frame = +2

Query: 68  RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 175
           R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 17  RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,564,619
Number of Sequences: 37544
Number of extensions: 382861
Number of successful extensions: 877
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)