Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30101
         (807 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296    129   2e-30
01_06_0087 + 26299692-26299971,26301721-26301933,26302027-263024...    30   1.9  
02_01_0424 - 3097245-3099377                                           30   2.5  

>03_05_0620 - 26196597-26196841,26196929-26197020,26197118-26197296
          Length = 171

 Score =  129 bits (312), Expect = 2e-30
 Identities = 62/84 (73%), Positives = 69/84 (82%)
 Frame = +1

Query: 511 YGRVAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIY 690
           Y RVAPRSGLALK+ IDVGAGVID DYRG VGV+LFNHSDTDF+VK GDRIAQ+I E I 
Sbjct: 87  YARVAPRSGLALKHSIDVGAGVIDADYRGPVGVILFNHSDTDFAVKPGDRIAQMIIEVIV 146

Query: 691 YPVLQEVANLSVTQRGDGGFGSTG 762
            P + EV +L  T RG+GGFGSTG
Sbjct: 147 TPEVAEVEDLDATVRGEGGFGSTG 170



 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 33/57 (57%), Positives = 39/57 (68%)
 Frame = +2

Query: 338 KIQPILKFTRLSENAFQPVRGSEKAAGIDLMSAYDYTVPARGKELVKTDLQIELPPG 508
           K+ P+LK  +LSENA  P RGS  AAG DL SA +  VPARGK +V TDL I +P G
Sbjct: 29  KVAPLLKVKKLSENAVLPSRGSALAAGYDLSSAAEVVVPARGKAMVPTDLSIAIPEG 85


>01_06_0087 +
           26299692-26299971,26301721-26301933,26302027-26302464,
           26304500-26304708
          Length = 379

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 20/80 (25%), Positives = 32/80 (40%)
 Frame = +1

Query: 520 VAPRSGLALKNFIDVGAGVIDEDYRGNVGVVLFNHSDTDFSVKKGDRIAQLICEKIYYPV 699
           +A   GLA    I VGAG  D  +  N  ++    ++  F  +KG  I     +   +  
Sbjct: 93  IAQEFGLANVTAIQVGAGPADFPHGANFAIISSTANNASFFARKGLDITPFSLDTQMFWF 152

Query: 700 LQEVANLSVTQRGDGGFGST 759
              +  L+    G GG G +
Sbjct: 153 RTHLQQLTQQLNGGGGGGGS 172


>02_01_0424 - 3097245-3099377
          Length = 710

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = -1

Query: 675 NKLCNSVSFFHTKVCVRVIKKNNSNITSIVLINNTGTNINEILQS*ARSRCYSTITPGGS 496
           N L  S + FH ++  R+   N  ++T + L  N+ TNI+  LQ    SR  +T+  GG+
Sbjct: 369 NALQLSFNKFHGQLSFRIT--NLKSLTYLSLAENSFTNISNTLQILKSSRDLTTLLIGGN 426


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,068,098
Number of Sequences: 37544
Number of extensions: 283783
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)