Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30090
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1344 - 29472139-29473292,29474478-29475386,29475504-294756...    30   2.5  
04_02_0001 + 8403210-8403468,8404659-8405110                           29   4.4  

>06_03_1344 -
           29472139-29473292,29474478-29475386,29475504-29475618,
           29476017-29476218,29477177-29477296,29477431-29477582,
           29478177-29478461
          Length = 978

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +3

Query: 447 MPTDLSMSASEPWRKRARSDTRPHRRRQRNMTNIGSVRLSEI 572
           +P  LS S  E  R   R   R HR+++RN+T   S   SE+
Sbjct: 379 LPESLSDSKVEVGRDTRRHQKREHRKKKRNITESESSSDSEV 420


>04_02_0001 + 8403210-8403468,8404659-8405110
          Length = 236

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 191 IPHNLASPAGSTILNTPVSLFFHAI 117
           IPH+LAS +  T+LN   +LFF  I
Sbjct: 107 IPHSLASSSSLTVLNLTNNLFFGTI 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,320,884
Number of Sequences: 37544
Number of extensions: 392317
Number of successful extensions: 871
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)