Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30088
(828 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 75 9e-14
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 75 9e-14
03_02_1010 - 13194002-13194339,13194421-13194573,13194661-131948... 53 3e-07
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732... 44 1e-04
12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 39 0.006
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 33 0.37
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 29 4.5
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 74.5 bits (175), Expect = 9e-14
Identities = 35/77 (45%), Positives = 54/77 (70%)
Frame = +2
Query: 89 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVWQPL 268
MLVLFETPAG+A+FK+LDE KL ++++L++EF T + A VV+LK F KFE+T++
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAA 60
Query: 269 LQLLRARYLSP*RKLLR 319
++ ++ RK L+
Sbjct: 61 TLIIDSKPTKGLRKFLQ 77
Score = 60.5 bits (140), Expect = 2e-09
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = +2
Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSLAHET 733
LN Y MR REWYGWHFPEL KI+ DN + KVV + T
Sbjct: 174 LNTYAMRVREWYGWHFPELTKIVADNIQYAKVVKMMGDRT 213
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/55 (41%), Positives = 39/55 (70%)
Frame = +1
Query: 343 DQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMA 507
+ L V DSKLG+AI+EK + C+ N+ V EL+R +R+Q+ L++GL +++ M+
Sbjct: 83 ETLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMS 137
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/26 (84%), Positives = 26/26 (100%)
Frame = +3
Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
LGL+HSLSRYKLKFSP+K+DTMI+QA
Sbjct: 138 LGLSHSLSRYKLKFSPEKVDTMIIQA 163
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 74.5 bits (175), Expect = 9e-14
Identities = 35/77 (45%), Positives = 54/77 (70%)
Frame = +2
Query: 89 MLVLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVWQPL 268
MLVLFETPAG+A+FK+LDE KL ++++L++EF T + A VV+LK F KFE+T++
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAA 60
Query: 269 LQLLRARYLSP*RKLLR 319
++ ++ RK L+
Sbjct: 61 TLIIDSKPTKGLRKFLQ 77
Score = 60.5 bits (140), Expect = 2e-09
Identities = 24/40 (60%), Positives = 27/40 (67%)
Frame = +2
Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKVVNSLAHET 733
LN Y MR REWYGWHFPEL KI+ DN + KVV + T
Sbjct: 174 LNTYAMRVREWYGWHFPELTKIVADNIQYAKVVKMMGDRT 213
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/55 (41%), Positives = 39/55 (70%)
Frame = +1
Query: 343 DQLLVGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMTAMA 507
+ L V DSKLG+AI+EK + C+ N+ V EL+R +R+Q+ L++GL +++ M+
Sbjct: 83 ETLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMS 137
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/26 (84%), Positives = 26/26 (100%)
Frame = +3
Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
LGL+HSLSRYKLKFSP+K+DTMI+QA
Sbjct: 138 LGLSHSLSRYKLKFSPEKVDTMIIQA 163
>03_02_1010 -
13194002-13194339,13194421-13194573,13194661-13194809,
13194932-13195184,13195282-13195469,13195684-13195841,
13196093-13196307,13196410-13196614
Length = 552
Score = 52.8 bits (121), Expect = 3e-07
Identities = 18/34 (52%), Positives = 27/34 (79%)
Frame = +2
Query: 614 LNNYIMRCREWYGWHFPELGKIITDNTLFVKVVN 715
+N++ MR REW+GWHFPEL KI+ DN ++ K+ +
Sbjct: 185 INSFSMRVREWFGWHFPELVKIVNDNYIYAKLAD 218
Score = 36.7 bits (81), Expect = 0.023
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +1
Query: 355 VGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEM 495
V + K+GS I E + C SN VQELLR +R D ++ L K ++
Sbjct: 98 VVEPKVGSHISEVTGIPCQSNEFVQELLRGVRLHFDRFISELKKSDL 144
Score = 36.3 bits (80), Expect = 0.030
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
LGL HS SR K+KF+ +++D M++QA
Sbjct: 149 LGLGHSYSRAKVKFNVNRVDNMVIQA 174
>07_03_1578 +
27872636-27872840,27872928-27873175,27873215-27873295,
27873665-27873822,27874391-27874450,27874655-27874873,
27875100-27875201,27875352-27875500,27875582-27875734,
27875839-27876194
Length = 576
Score = 44.4 bits (100), Expect = 1e-04
Identities = 15/32 (46%), Positives = 23/32 (71%)
Frame = +2
Query: 638 REWYGWHFPELGKIITDNTLFVKVVNSLAHET 733
REWY WHFPEL KI+ DN ++ K+ + +++
Sbjct: 251 REWYSWHFPELVKIVNDNYVYSKIAKFVVNKS 282
Score = 36.3 bits (80), Expect = 0.030
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 507 LGLAHSLSRYKLKFSPDKIDTMIVQA 584
LGL HS SR K+KF+ +++D M++QA
Sbjct: 187 LGLGHSYSRAKVKFNVNRVDNMVIQA 212
Score = 31.5 bits (68), Expect = 0.85
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1
Query: 355 VGDSKLGSAIREKFDLQCVSNTNVQELLRCIRSQMDSLLAGLPKKEMT 498
V + K+GS I E + C N VQELLR +R D + L + T
Sbjct: 98 VMEPKVGSHISEATGIPCQCNEFVQELLRGVRLHFDHFIDQLKVVDFT 145
>12_02_1165 +
26633371-26633679,26635183-26635276,26635732-26635822,
26636112-26636199,26636300-26636341,26636648-26636809,
26636915-26637094,26637280-26637447,26637977-26638195
Length = 450
Score = 38.7 bits (86), Expect = 0.006
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +2
Query: 95 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVKFEDTTEVW 259
+LFETP+G+A+F++ D ++++ F P A VV+ F++ D + VW
Sbjct: 172 MLFETPSGFAMFRVSD-VLFRYPEDIWSSFTDPHTAHQVVRTIGFIEVGDKSVVW 225
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 32.7 bits (71), Expect = 0.37
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 71 YKCASSMLVLFETPAGYAIFKLLDESKL--SEIDNLYQEFNTPEGASTVVKLKNFVKFED 244
Y C +LVLFETP+G+A+F + + + + + ++ F S + LK F + +D
Sbjct: 26 YHCLI-VLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKD 84
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +2
Query: 95 VLFETPAGYAIFKLLDESKLSEIDNLYQEFNTPEGASTVVKLKNFVK 235
+LFETP+G+ +F++ D ++++ F P A V+ F++
Sbjct: 360 MLFETPSGFVMFRVSD-VLFRYPEDIWSSFTDPRTAHQAVRTIGFIE 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,480,076
Number of Sequences: 37544
Number of extensions: 395298
Number of successful extensions: 743
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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