Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30087X
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0196 - 12898050-12898553,12898689-12900824 29 1.0
02_04_0022 - 18992517-18993033,18993119-18993360,18993535-189939... 27 4.1
07_03_0383 - 17476271-17479228,17480466-17480750 26 5.4
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582... 26 5.4
03_05_0741 + 27287414-27287479,27287887-27287946,27288949-272891... 26 5.4
08_02_0849 - 21841470-21841883,21843748-21843813,21844768-218449... 26 7.2
01_01_1080 + 8495480-8495851 26 7.2
12_01_0508 + 4027113-4028522 25 9.5
03_04_0117 + 17411064-17411955,17412111-17413543 25 9.5
02_05_1334 - 35765973-35766068,35766272-35766353,35766448-357664... 25 9.5
>06_02_0196 - 12898050-12898553,12898689-12900824
Length = 879
Score = 28.7 bits (61), Expect = 1.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 136 HYKSSITNKCTILLMARPDAARTHYV 59
HY + + N+C +LL+ R +A H V
Sbjct: 475 HYLTELVNRCLLLLVKRNEAGHVHEV 500
>02_04_0022 -
18992517-18993033,18993119-18993360,18993535-18993923,
18995447-18995603
Length = 434
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/27 (55%), Positives = 17/27 (62%)
Frame = -1
Query: 260 GRGAGRCVPADHCALYAFIITSACVFS 180
G AGR VPA A A +I +ACVFS
Sbjct: 3 GARAGR-VPAAAAAAAAVLIVAACVFS 28
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/58 (22%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 181 LVHIKYISFSS*NFIHYKSSITNKCTILLMARPDAARTHYVPAYAGRIQK-KNVHISG 11
+ H++Y+SF++ SI N + + + R + +P GR++ +++ +SG
Sbjct: 571 MAHLRYLSFANTQIREIPGSIENLRMLRFLILRNCIRLNSLPESVGRLKNLRSLDMSG 628
>07_03_0369 -
17356806-17356934,17357145-17357278,17357989-17358247,
17358322-17358410,17358644-17358794,17358889-17359032,
17359358-17359477,17359595-17359769,17359842-17360215
Length = 524
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 67 HYVPAYAGRIQKKNVHISG 11
HY+PA+A R+ K N + G
Sbjct: 247 HYIPAFASRVYKGNKNSEG 265
>03_05_0741 +
27287414-27287479,27287887-27287946,27288949-27289112,
27289158-27289241,27290115-27290178,27291181-27291334,
27291605-27291675,27292138-27292242,27292734-27292826,
27293672-27293746,27294114-27294199,27294293-27294499,
27294585-27294684,27294765-27294835,27294960-27295041,
27295920-27296078,27296480-27296533,27296775-27296817,
27297630-27297712,27298569-27298631,27298720-27298794,
27299620-27299745,27300267-27300499,27300611-27300655,
27300953-27301019,27302095-27302166,27302276-27302520,
27302598-27302655,27302743-27302910,27303224-27303298,
27303412-27303669
Length = 1101
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -2
Query: 61 VPAYAGRIQKKNVHISGP 8
V +AGR QKKN+ I GP
Sbjct: 539 VLTHAGRKQKKNISIEGP 556
>08_02_0849 -
21841470-21841883,21843748-21843813,21844768-21844951,
21845427-21847468,21848544-21848870
Length = 1010
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 141 LYITKVVSQTNVRFY*WPDLTPLG 70
L+ TKVV++TN F W D T G
Sbjct: 475 LHNTKVVNETNDSFDDWQDFTTSG 498
>01_01_1080 + 8495480-8495851
Length = 123
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 93 WPDLTPLGLITSLPTLVEYKKKTYTF 16
WP + P GL+ PT+ + T F
Sbjct: 30 WPSIPPFGLLLFDPTIFNFPNMTIIF 55
>12_01_0508 + 4027113-4028522
Length = 469
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 207 KGVEGAVIGGNASPRTPT 260
K VEGA GG AS RT T
Sbjct: 59 KPVEGAATGGRASHRTST 76
>03_04_0117 + 17411064-17411955,17412111-17413543
Length = 774
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -2
Query: 199 HLHACSLVHIKYIS 158
H H C+L H+KY+S
Sbjct: 553 HHHICALFHLKYLS 566
>02_05_1334 -
35765973-35766068,35766272-35766353,35766448-35766485,
35766601-35766657,35766795-35766858,35766947-35767043,
35767604-35767656,35767837-35767921,35768649-35769675
Length = 532
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 93 WPDLTPLGLITSLPTLVEY 37
+PDL PLGL +SL +L+ +
Sbjct: 92 FPDLVPLGLASSLSSLLTH 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,612,383
Number of Sequences: 37544
Number of extensions: 127619
Number of successful extensions: 304
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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