Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30070
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 50 1e-06
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 48 9e-06
01_01_1176 - 9372879-9373097,9373814-9374278,9374372-9375447,937... 39 0.004
10_06_0131 - 11066033-11066251,11066548-11067012,11067102-110681... 36 0.023
02_05_1202 + 34932291-34933027,34933297-34933774 36 0.023
06_01_0611 + 4420873-4422207 32 0.49
07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709 31 0.85
11_06_0584 - 25220371-25222917 31 1.1
01_01_0796 + 6190931-6192745 31 1.1
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111 30 2.0
02_02_0197 + 7689403-7691070 29 2.6
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 29 4.5
03_01_0538 - 4038954-4039444,4040172-4040248,4040838-4040911,404... 29 4.5
10_03_0009 + 6976824-6976932,6977305-6977592,6977703-6977851 28 6.0
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 28 6.0
05_07_0064 + 27440520-27440942,27442387-27442998,27443109-274431... 28 6.0
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +1
Query: 7 QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 186
QW +S +E+ + W+FP LG + + E A + L +L L+ HL + T+LV
Sbjct: 666 QWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHS 725
Query: 187 ITLADVIVFSTLLHAFQHVL 246
+TLAD+++ L F ++
Sbjct: 726 VTLADIVMTCNLYMGFARIM 745
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +1
Query: 7 QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 186
QW +S +E+ W++P LGI + + E A + L +L L+ HL + T+LV
Sbjct: 105 QWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHS 164
Query: 187 ITLADVIVFSTLLHAFQHVL 246
+TLAD+++ L F ++
Sbjct: 165 VTLADIVMTCNLYMGFARIM 184
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 515 KDPFDSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDP 631
K+P D +P +D++KR+YSN +I FW+ +DP
Sbjct: 264 KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDP 305
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 515 KDPFDSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDP 631
K+P D +P +D++KR+YSN +I FW+ +DP
Sbjct: 829 KNPLDLLPPSKMILDEWKRLYSNTKTNFREVAIKGFWDMYDP 870
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 47.6 bits (108), Expect = 9e-06
Identities = 25/80 (31%), Positives = 42/80 (52%)
Frame = +1
Query: 7 QWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTER 186
QW +S +E+ W++P LG + E A + L +L L+ HL + T+LV
Sbjct: 120 QWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHS 179
Query: 187 ITLADVIVFSTLLHAFQHVL 246
+TLAD+++ L + F +L
Sbjct: 180 VTLADIVMTCNLYYGFVRIL 199
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 515 KDPFDSMPKGTFNMDDFKRVYSNED---EAKSIPYFWEKFDP 631
K+P D +P +D++KR+YSN +I FW+ +DP
Sbjct: 281 KNPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKGFWDMYDP 322
>01_01_1176 -
9372879-9373097,9373814-9374278,9374372-9375447,
9375534-9375687,9375783-9375879,9376238-9376374
Length = 715
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +1
Query: 115 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 222
S+ AA LDG+L +RTFLV+ +++AD++V+S L
Sbjct: 93 SEFEAACSFLDGYLASRTFLVSYGLSIADIVVWSNL 128
>10_06_0131 -
11066033-11066251,11066548-11067012,11067102-11068177,
11068269-11068422,11068511-11068601,11069016-11069152
Length = 713
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 115 SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 222
S+ A +DG+L++RTFLV +T+AD+ V+S L
Sbjct: 91 SEFEVACSFVDGYLMSRTFLVGHVLTIADITVWSNL 126
>02_05_1202 + 34932291-34933027,34933297-34933774
Length = 404
Score = 36.3 bits (80), Expect = 0.023
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +1
Query: 88 NKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTLLHAFQHVLH 249
+++ + A +L AAL L+ HL +L + +TLADV +F+TL+ F V H
Sbjct: 252 SQEAYDAAAGELFAALDRLEDHLSGSRYLCGDTLTLADVCLFTTLVR-FDLVYH 304
>06_01_0611 + 4420873-4422207
Length = 444
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +2
Query: 206 LSSVHCCMLSSTCYTRGPFVADKRSALAPDRRPPATSVGRRRLAHALC 349
L C + S Y A + + P RRPPA S RRRLA + C
Sbjct: 266 LGQRRCFSMGSYEYVMDEHAALRVAVRTPKRRPPARSRSRRRLALSEC 313
>07_01_0377 + 2823602-2823880,2824372-2824569,2824611-2824709
Length = 191
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +1
Query: 103 ERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV--FSTLLHAF-QHVLHPRSVRR 267
E AK++LL L+ L+G L R+F + D+++ FS++ H + QH+ R R
Sbjct: 110 EMAKAELLDQLRRLEGVLGDRSFFSGDEFGFLDIVLIPFSSMFHGYKQHMWVKRCKER 167
>11_06_0584 - 25220371-25222917
Length = 848
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = -3
Query: 185 LSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNCMIPR*GKTQAQEAGSSSLSD 21
+++ + R R P + R + +ST C C +PR K +AG S+++D
Sbjct: 386 INIRKTARRRELPQKQHQHKLR--WTQSTICCCYCRVPRIMKATTADAGGSNIND 438
>01_01_0796 + 6190931-6192745
Length = 604
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 152 IFS-HAPSLLPRESHLPMSLSSVHCCMLSSTCYTRGPFV-ADKRSALAPDRRP 304
+FS HAP+L P S L M ++ H + + + PF+ +D+ LAP P
Sbjct: 352 LFSDHAPTLAPLPSPLQMPVAETHLPLQVQAPFMQEPFLFSDQAPVLAPPPTP 404
>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
Length = 553
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 158 SHAPSLLPRESHLPMSLSSVHCCMLSSTCYTR 253
+H PSL+P ESHL S+SS +L + R
Sbjct: 498 NHQPSLVPNESHLNNSVSSTADGLLMEAAHQR 529
>02_02_0197 + 7689403-7691070
Length = 555
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Frame = +2
Query: 179 PRESHLPMSLSSV-HCCMLSSTCYTR---GPFVADKRSAL--APDRRPPATSVGRRRLAH 340
P LP+ L + H +L+S C R G V D R + RR PAT+ RL H
Sbjct: 3 PSRPRLPLLLLLLLHFSLLASPCSARWRDGCGVGDLRESFLRCVARRSPATAADPSRLVH 62
Query: 341 ALCGSSY 361
A +SY
Sbjct: 63 APGDASY 69
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = -3
Query: 221 SVLKTMTSASVILSVTRKVRVRRCPSSTFKAASRSDFARSTFCLLNCMIPR*GKTQAQEA 42
S + M +A V + +K RVR PSST ++A+RS C + + + A+
Sbjct: 410 SAVDRMVNA-VKVEPKKKARVRPSPSSTLRSANRSTAGTLVVCPASVLRQWASELAAKVT 468
Query: 41 GSSSLS 24
SS LS
Sbjct: 469 ESSKLS 474
>03_01_0538 -
4038954-4039444,4040172-4040248,4040838-4040911,
4041115-4041203,4041481-4041563,4041645-4042233,
4042915-4043101
Length = 529
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 264 SLINVQRWLLTVAHQPQVSAVVGSLTLCAAPPTYDP 371
S+ ++ WL + P+ SA SL++ AAPP+ P
Sbjct: 196 SISGIKSWLRQAMYVPERSAAALSLSVPAAPPSEAP 231
>10_03_0009 + 6976824-6976932,6977305-6977592,6977703-6977851
Length = 181
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 302 GDGQEPTLNVYQRRTDLGCSTCWKACSSV 216
G GQE L V +R GCS CW S V
Sbjct: 131 GYGQERFLLVVGKRFACGCSLCWYGRSEV 159
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 510 SPRTPSTRCLKVP--STWMISSVSTPTKTKLNLFLTSGRSLIP 632
S RTPST +K P S W SVST + NLF ++ L P
Sbjct: 441 SSRTPSTP-IKFPAISRWYSVSVSTSINSSSNLFSSAAAVLRP 482
>05_07_0064 +
27440520-27440942,27442387-27442998,27443109-27443175,
27443271-27443362,27443493-27443708,27443869-27444006,
27444325-27444474
Length = 565
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = +1
Query: 1 VWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVT 180
V +W + +LP A L ++ K+ V+R KS L A G+L+ + F +
Sbjct: 411 VARWGNLIGYIVLPFRIAMFHDPLEYIRQGKRTVDRKKSSLEAIFTYWSGNLIVKLFGIK 470
Query: 181 ERITLADVIVFSTLLHAFQHVLHP 252
L ++ +T L +F ++ P
Sbjct: 471 TAAALCHGMLANTTL-SFSSMVGP 493
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,477,575
Number of Sequences: 37544
Number of extensions: 419877
Number of successful extensions: 1249
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -