Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30069
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0016 + 31042619-31042795,31043066-31043170 49 2e-06
08_02_1137 + 24623967-24623991,24625815-24625831,24626100-246262... 31 0.51
06_03_0395 - 20354713-20355570 31 0.67
11_06_0326 - 22382001-22383248 29 1.6
09_04_0504 + 18180321-18181013 24 2.7
09_04_0541 + 18437075-18440062 29 2.7
06_03_0078 + 16291254-16291532,16291654-16291725 29 2.7
07_01_0466 - 3518315-3521428 24 3.1
03_05_0493 + 24879554-24879674,24880272-24880339,24880761-24880811 28 3.6
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 28 3.6
07_03_0332 + 16880184-16881017,16881334-16881462,16882685-168827... 28 4.7
03_06_0272 - 32775620-32776501 28 4.7
03_05_0777 + 27636342-27637115 28 4.7
11_01_0197 + 1554449-1555101,1555462-1555558 27 6.3
08_01_0423 + 3740344-3740408,3740949-3741015,3742110-3742218,374... 27 6.3
06_01_0919 - 7090494-7091219,7091630-7091763,7091860-7091927,709... 27 8.3
05_03_0057 - 7872771-7873326,7873432-7873786,7873892-7874103,787... 27 8.3
05_01_0594 - 5337804-5337976,5338282-5338436,5338591-5338745,533... 27 8.3
01_05_0436 + 22134275-22134387,22134481-22135249,22137024-221370... 27 8.3
>03_06_0016 + 31042619-31042795,31043066-31043170
Length = 93
Score = 48.8 bits (111), Expect = 2e-06
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Frame = +3
Query: 105 DPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAW-QLYFVPASV 281
DPR+ R+Y PP +DL DY L +VF + G+M+R K C+W + F S+
Sbjct: 19 DPRQPSTARQYTPP---KLSPQDLPIDYAGFLAVVFGVLGVMLRYKVCSWIAIIFCAQSL 75
Query: 282 LQTQEFPMTLNRL 320
+ + F L +L
Sbjct: 76 VNMKNFENDLKQL 88
>08_02_1137 +
24623967-24623991,24625815-24625831,24626100-24626216,
24626399-24626440,24627246-24629705
Length = 886
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/57 (24%), Positives = 27/57 (47%)
Frame = +2
Query: 206 GIFNVWLNDEIEMVRVAAVFCSSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNP 376
G F WL E+E+ +A+ +++++ + +I+ S + V MS NP
Sbjct: 84 GRFCKWLKSELELQGIASFVADRAKYSDTQSHEIADRIICSVAFGVIVVTMSSFLNP 140
>06_03_0395 - 20354713-20355570
Length = 285
Score = 30.7 bits (66), Expect = 0.67
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 117 ADRERRYKPPPPTSAPAE 170
ADR RR +PPPPT+ P E
Sbjct: 119 ADRGRRRQPPPPTAPPLE 136
>11_06_0326 - 22382001-22383248
Length = 415
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 93 QLSADPRRADRERRYKPPPPTSAPA 167
QL+ADP R + R PPPP APA
Sbjct: 252 QLAADPARKSKPR--APPPPPPAPA 274
>09_04_0504 + 18180321-18181013
Length = 230
Score = 24.2 bits (50), Expect(2) = 2.7
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +3
Query: 108 PRRA--DRERRYKPPPPTSAPA 167
P+R+ + RR PPPP PA
Sbjct: 119 PKRSKNSKRRRVSPPPPQPVPA 140
Score = 23.0 bits (47), Expect(2) = 2.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 141 PPPPTSAPAEDL 176
PPPPT+A A D+
Sbjct: 141 PPPPTTADAADV 152
>09_04_0541 + 18437075-18440062
Length = 995
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +2
Query: 212 FNVWLNDEIEMVRVAAVFCSSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNP 376
F WL E+E+ +A+ +++++ + +I+ S + V M+ NP
Sbjct: 190 FCKWLKSELELQGIASFMADRARYSDAQSHEVADRIICSVTFGVVVVTMASFLNP 244
>06_03_0078 + 16291254-16291532,16291654-16291725
Length = 116
Score = 28.7 bits (61), Expect = 2.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 33 LIRRVTATNI---CGPIIKSGKMQLSADPRRADRERRYKPPPPT 155
L+RR T+ CGPI + + LS+ R + PPPP+
Sbjct: 18 LLRRFAYTSYSSSCGPIRRHAAVALSSTTTTTTRFAAWSPPPPS 61
>07_01_0466 - 3518315-3521428
Length = 1037
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 69 PIIKSGKMQLSADPRRADRERRYKPPPPTSAP 164
P++ S + SA+ + + PPPPT P
Sbjct: 218 PVMASEAVAASAEAAPEEEQILTPPPPPTPTP 249
Score = 22.6 bits (46), Expect(2) = 3.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 141 PPPPTSAPAEDLTTDYMNILGMVF 212
PPPP AP E D ++ + +F
Sbjct: 263 PPPPPEAPVERSKHDLVDKMPYLF 286
>03_05_0493 + 24879554-24879674,24880272-24880339,24880761-24880811
Length = 79
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 228 LSHTLKIPSLKYSYNLWLGLLLEQKWVEVVYSD 130
L HTL SL S+ +W L W + VY D
Sbjct: 21 LDHTLSSSSLPTSWGVWANLGSINTWEKCVYGD 53
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 96 LSADPRRADRERRYKPPPPTSAPAED 173
L+A PRRA R PPP AP E+
Sbjct: 33 LAAAPRRARSGRHASPPPQRVAPEEE 58
>07_03_0332 +
16880184-16881017,16881334-16881462,16882685-16882750,
16883159-16883224,16884419-16884457,16884858-16885028
Length = 434
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 141 PPPPTSAPAEDLTTDY 188
PPPP+SAPA + DY
Sbjct: 251 PPPPSSAPARTSSADY 266
>03_06_0272 - 32775620-32776501
Length = 293
Score = 27.9 bits (59), Expect = 4.7
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Frame = +3
Query: 81 SGKMQLSADP-RRADRER--RYKPPPPT--SAPAEDLTTDYMNILGMVFSMCGLMMRLKW 245
+ K + DP D E R +PPPPT +A A + ++ + +F + GL M +
Sbjct: 85 ASKKRAKTDPDEETDGETSCRRRPPPPTAVAAAAAAVVSEPAWVRAELFPLHGLPMDMP- 143
Query: 246 CAWQLYFVPASVLQTQEFPMTLNRL*VPS 332
L F+ A +LQ +F R +PS
Sbjct: 144 ---PLRFIVAKLLQRSDFYPQQARFLLPS 169
>03_05_0777 + 27636342-27637115
Length = 257
Score = 27.9 bits (59), Expect = 4.7
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 114 RADRERRYKPPPPTSAPAE 170
RA+ ER +PPPP PAE
Sbjct: 201 RAELERALQPPPPPPPPAE 219
>11_01_0197 + 1554449-1555101,1555462-1555558
Length = 249
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 120 DRERRYKPPPPTSAPAEDLTT-DYMNIL 200
D E R+ PPP PAED ++ +Y +L
Sbjct: 125 DSEYRHSPPPRPKKPAEDKSSMEYTEVL 152
>08_01_0423 +
3740344-3740408,3740949-3741015,3742110-3742218,
3742320-3742447,3742899-3743324
Length = 264
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 87 KMQLSADPRRADRERRYKPPPPTSAPAEDL 176
K+Q D +A+R R++ P + APA+D+
Sbjct: 170 KLQQQLDRLKAERARQHHPATSSPAPADDV 199
>06_01_0919 -
7090494-7091219,7091630-7091763,7091860-7091927,
7092471-7092515,7092620-7092639,7092798-7092860,
7092946-7093115,7093216-7093252
Length = 420
Score = 27.1 bits (57), Expect = 8.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 289 VCKTDAGTKYSCHAH 245
+CK+ TKY CH H
Sbjct: 393 ICKSTLATKYRCHVH 407
>05_03_0057 -
7872771-7873326,7873432-7873786,7873892-7874103,
7875248-7875453
Length = 442
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 63 CGPIIKSGKMQLSADPRRADRERRYKPPPPTSAP 164
C + + DPRR + Y+ P P+S+P
Sbjct: 28 CSTTAGNNSSTFTVDPRRKSQNNVYQTPSPSSSP 61
>05_01_0594 -
5337804-5337976,5338282-5338436,5338591-5338745,
5338864-5338992,5339096-5339189,5339293-5339366,
5339716-5339851,5341546-5341562
Length = 310
Score = 27.1 bits (57), Expect = 8.3
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 75 IKSGKMQLSADPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFSMC 221
+ +GK L R + R PP P AP+E+ TD +N + ++C
Sbjct: 191 LATGKNYLKTPMRTLRSDPR--PPTPDQAPSEEGATDSVNRSNLEDTLC 237
>01_05_0436 +
22134275-22134387,22134481-22135249,22137024-22137086,
22137375-22137755,22137900-22138001
Length = 475
Score = 27.1 bits (57), Expect = 8.3
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +2
Query: 233 EIEMVRVAAVFCSSISFANSRVSDDTKQIVSSFML-SISAVVMSYLQNPAPMTPPWA 400
E E + +++ SS+S S +S D+ +SSF L + +A+ MS L P P PP A
Sbjct: 86 EAEHLMLSSSSPSSLSSGRS-LSIDSAGSMSSFSLDAAAALAMSTLAVPHPYPPPVA 141
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,425,514
Number of Sequences: 37544
Number of extensions: 254959
Number of successful extensions: 1270
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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