Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30063
(477 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0951 - 21769342-21769752 104 4e-23
02_02_0470 - 10700092-10700505 104 4e-23
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 35 0.039
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 32 0.28
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 31 0.64
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 30 1.1
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 29 1.5
01_01_0249 + 2047793-2048561,2049861-2049896,2050068-2051012,205... 29 1.5
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 29 2.6
12_02_0502 - 19746100-19746185,19746745-19750474 28 4.5
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 28 4.5
08_02_1498 + 27553449-27553730,27553834-27553946,27554063-275541... 28 4.5
06_03_0860 + 25484826-25485758,25486155-25486406 28 4.5
05_06_0119 + 25742277-25742434,25742976-25743061,25743146-257432... 28 4.5
12_02_0674 - 21745321-21746223,21746229-21747608 27 5.9
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 27 5.9
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 27 5.9
04_01_0187 - 2153546-2154520,2154581-2155858 27 5.9
01_01_0235 - 1964981-1964997,1965545-1966325 27 5.9
10_02_0059 + 4785858-4786988 27 7.8
09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555 27 7.8
09_02_0555 - 10588685-10592038 27 7.8
03_02_1029 - 13488535-13493037 27 7.8
>10_08_0951 - 21769342-21769752
Length = 136
Score = 104 bits (249), Expect = 4e-23
Identities = 46/95 (48%), Positives = 67/95 (70%)
Frame = +3
Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
M K +KPGK V++L GR+AGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 192 KIHKRSKIKPFVKVVNYNHLMQHVIQLTSALKNSA 296
K K+S++K F+K+VN+ HLM L LK A
Sbjct: 61 KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVA 95
Score = 49.2 bits (112), Expect = 2e-06
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Frame = +2
Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKFSAKDLK 310
C + P + ++D + ++ + K F + L TRYT+D ++ +A
Sbjct: 41 CLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDA 100
Query: 311 DPAKRKKLRF--NTRVRFEERYKSGKNKWFFQKLRF 412
+ KK+ + + R E+R+K+GKN+WFF KLRF
Sbjct: 101 LATRDKKVAACKSAKARLEDRFKTGKNRWFFTKLRF 136
>02_02_0470 - 10700092-10700505
Length = 137
Score = 104 bits (249), Expect = 4e-23
Identities = 42/81 (51%), Positives = 63/81 (77%)
Frame = +3
Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 191
M K +KPGK V++L GRYAGRKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 192 KIHKRSKIKPFVKVVNYNHLM 254
K K+S++K F+K+VN+ H+M
Sbjct: 61 KTAKKSRVKCFLKLVNFTHIM 81
Score = 48.0 bits (109), Expect = 4e-06
Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Frame = +2
Query: 131 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDATRYTVDFSFEKFSAKDLK 310
C + P + ++D + ++ + K F + + TRYT+D F+ ++
Sbjct: 41 CLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPD 100
Query: 311 DPAKR-KKLRF--NTRVRFEERYKSGKNKWFFQKLRF 412
A R KK+ + R EER+K+GKN+WFF KLRF
Sbjct: 101 ALATRDKKVAACKAAKARLEERFKTGKNRWFFTKLRF 137
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 34.7 bits (76), Expect = 0.039
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 3 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107
P+K+ + PG V+++L+GRY G++ + +K G
Sbjct: 68 PTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSG 102
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 31.9 bits (69), Expect = 0.28
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +2
Query: 62 VRGSQGYRSQELRRRYLRQAVRACFRRWYRQVPPESAQ--EDGKE*NPQEVQDKAFRE 229
V G+ G + ++RR+L QA+ + +R R PP +A E + P +++ AF E
Sbjct: 24 VAGAGGRKRGRVQRRHLTQALESFWRHAPRPAPPAAAARGEANRSWQPPPLENPAFEE 81
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 30.7 bits (66), Expect = 0.64
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKLKSTV*RVASSDYSLQPSRK 220
RSFL AG +R F NFSK+ ++ R+ D + + S +
Sbjct: 453 RSFLGLAGYYRRFIENFSKIAKSMTRLLQKDVNYKWSEE 491
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +2
Query: 47 GLKWPVRGSQGYRSQELRRRYLRQAVRACFRRWYRQ--VPPE-SAQEDGKE*N-PQEVQD 214
G KW + + RS E +R ++ +A+R R + ++ +PP DG E N +EV D
Sbjct: 1000 GNKWDMCTKEHSRSNEFKRLFVPEAIRKLIRPYDKELSIPPVFPGVHDGNEVNSKEEVND 1059
Query: 215 KA 220
+
Sbjct: 1060 SS 1061
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKLKSTV*RVASSD 244
RSFL AG +R F NFSK+ + R+ D
Sbjct: 985 RSFLGLAGYYRRFIENFSKIAKPMTRLLQKD 1015
>01_01_0249 +
2047793-2048561,2049861-2049896,2050068-2051012,
2051215-2051264
Length = 599
Score = 29.5 bits (63), Expect = 1.5
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = -1
Query: 276 KSTV*RVASSDYS-LQPSRKALSWTSCGFYSFPSSCALSGGTCRYQRRKHARTAC 115
+S V A ++YS L L W GF +C SGG CRY A AC
Sbjct: 190 ESPVNLTAGTNYSPLFKKGFVLEWQKNGFGDC-DACNASGGQCRYNNDSAAAFAC 243
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 28.7 bits (61), Expect = 2.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 12 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 107
M + PG V+++L+GR+ G++ + +K G
Sbjct: 94 MRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125
>12_02_0502 - 19746100-19746185,19746745-19750474
Length = 1271
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 258 HVIQLTSALKNSAQKT*KTLQNVRSCVSTREYVLK 362
H++ S L N + + + LQNVR+C E LK
Sbjct: 729 HMLSALSTLTNLKRLSLRNLQNVRNCKDAMEIKLK 763
>10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKLKSTV*RVASSD 244
RSFL AG +R F NFSK+ + R+ +
Sbjct: 954 RSFLGLAGYYRRFIENFSKIDKPMTRLLQKE 984
>08_02_1498 +
27553449-27553730,27553834-27553946,27554063-27554129,
27554310-27554402,27554516-27554659,27554860-27554954,
27555120-27555412,27555514-27555632,27555742-27556094,
27556177-27556286,27556403-27556512,27556802-27557671
Length = 882
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 51 LSGRYAGRKAIVVKNYDEGTSD-KPYGHAFVAGIDRYPRKVHKRMGKNKI 197
L R AG + ++ + GT D G V G+D R+VH G +
Sbjct: 599 LEHRMAGVYTVTIRGLNTGTLDLTTNGWGHVVGLDGERRRVHSEQGMGAV 648
>06_03_0860 + 25484826-25485758,25486155-25486406
Length = 394
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 100 TKVPPTSRTGMLSSLVSTGTPGKCTRGWER 189
T PP+ R + SSL+ TP KC+ G E+
Sbjct: 130 TPRPPSVRPVVASSLLPYTTPAKCSTGGEQ 159
>05_06_0119 +
25742277-25742434,25742976-25743061,25743146-25743223,
25743919-25744031,25744094-25744171,25744941-25744949,
25744981-25745082,25745165-25745714,25745941-25746146,
25746868-25747031,25747157-25747310
Length = 565
Score = 27.9 bits (59), Expect = 4.5
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -2
Query: 191 ILSHPLVHFPGVPVDTSDESMPVRLVGGTFVVILDYDSLATRVPAT*DQHYFTRLHYLTH 12
ILS P+++ GV V ++P+RL+ G FV ++ P T F L Y H
Sbjct: 98 ILSLPMLYLQGV-VLFPGATLPLRLIQGRFVAAVEKALRQVDAPCTIGVFNFQVLMYKRH 156
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +1
Query: 88 SRITTKVPPTSRTGMLSSLVS--TGTPGKC 171
S T+K+P T RT +LSS S TP C
Sbjct: 534 STATSKIPSTPRTSLLSSSTSKIPSTPSTC 563
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKL 277
RSFL AG +R F NFSK+
Sbjct: 505 RSFLGLAGYYRRFIKNFSKI 524
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKLKSTV*RVASSD 244
RSFL AG +R F NFSK+ + R+ +
Sbjct: 1071 RSFLGLAGYYRRFIENFSKIARPMTRLLQKE 1101
>04_01_0187 - 2153546-2154520,2154581-2155858
Length = 750
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKLKSTV*RVASSD 244
RSFL F G +R F NF K+ + R+ D
Sbjct: 110 RSFLGFTGYYRRFIDNFFKIAKPMTRLLQKD 140
>01_01_0235 - 1964981-1964997,1965545-1966325
Length = 265
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 255 ASSDYSLQPSRK-ALSWTSCGFYSFPSSCALSGGTCRYQRRKHARTAC 115
A ++YS Q + L W GF +C SGG CRY A AC
Sbjct: 201 AGTNYSPQFKKGFVLEWQKNGFGDC-DACNGSGGQCRYINDSAAAFAC 247
>10_02_0059 + 4785858-4786988
Length = 376
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKL 277
RSFL AG +R F NFSK+
Sbjct: 224 RSFLGLAGYYRRFIENFSKI 243
>09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555
Length = 383
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKL 277
RSFL AG +R F NFSK+
Sbjct: 281 RSFLGLAGYYRRFIENFSKI 300
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKL 277
RSFL AG +R F NFSK+
Sbjct: 411 RSFLGLAGYYRRFIENFSKI 430
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 336 RSFLRFAGSFRSFALNFSKL 277
RSFL AG +R F NFSK+
Sbjct: 794 RSFLGLAGYYRRFIENFSKI 813
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,881,160
Number of Sequences: 37544
Number of extensions: 232353
Number of successful extensions: 766
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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