Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30060
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   168   3e-42
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   167   6e-42
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   152   2e-37
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456...    28   6.5  

>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  168 bits (409), Expect = 3e-42
 Identities = 85/164 (51%), Positives = 108/164 (65%)
 Frame = +1

Query: 22  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 201
           ++K +RT  +S D+               T + FN ++L+RLFMS+ NRPP+S+ RLA+ 
Sbjct: 11  NKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPPLSLRRLAKF 70

Query: 202 MKKTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALR 381
           M+            G   +D R+ +IPKM V AL  TE ARARI+ AGGE LTFDQLALR
Sbjct: 71  MEGKEENNIAVI-VGTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALR 129

Query: 382 APTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
           AP G+ TVL++G +NAREAVRHFG APG P SHTKPYVR+KG K
Sbjct: 130 APLGENTVLLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRK 173


>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  167 bits (406), Expect = 6e-42
 Identities = 85/170 (50%), Positives = 111/170 (65%), Gaps = 6/170 (3%)
 Frame = +1

Query: 22  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 201
           ++K +RT  +S+D+               T + FN ++L+RLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPPLSMRRLVRF 70

Query: 202 MKKTNS*GFDCRGS------GDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTF 363
           M+          G       G   +D R+Y++P M VAAL  TE ARARI+ AGGE LTF
Sbjct: 71  MEGKVPDRHAISGDQIAVIVGTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTF 130

Query: 364 DQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKGLK 513
           DQLALRAP G+ TVL++G +NAREAV+HFGPAPG P S+TKPYVR+KG K
Sbjct: 131 DQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  152 bits (369), Expect = 2e-37
 Identities = 87/182 (47%), Positives = 110/182 (60%), Gaps = 18/182 (9%)
 Frame = +1

Query: 22  DRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPISVSRLARH 201
           ++K +RT  KS D+               T + FN ++LRRLFMS+ NRPP+S+ RL R 
Sbjct: 11  NKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPPLSLRRLVRF 70

Query: 202 MK-KTNS*GFDCRGSGDSQNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLAL 378
           M+ K N         G   +D R+Y++P M VAAL  TE ARARI+  GGE LTFDQLAL
Sbjct: 71  MEGKENQIAVIV---GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLAL 127

Query: 379 RAPTGKKT-----------------VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKG 507
           RAP G+ T                 VL++G +NAREAV+HFGPAPG P S+TKPYVR+KG
Sbjct: 128 RAPLGQNTYIAMPEILTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKG 187

Query: 508 LK 513
            K
Sbjct: 188 RK 189


>11_01_0572 +
           4565353-4565535,4566856-4567095,4567922-4568086,
           4568612-4568887
          Length = 287

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 356 LLLISWLFVLRLARRQYWYKVSEML 430
           LL+++WLFV+   RR  W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,761,155
Number of Sequences: 37544
Number of extensions: 377959
Number of successful extensions: 1077
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)