Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30057
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208... 84 1e-16
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 32 0.42
06_01_0134 - 1029149-1029632,1029766-1029821,1030725-1030727 31 0.74
10_08_0815 + 20782834-20782996,20783062-20783144,20783227-207832... 30 2.3
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 30 2.3
11_01_0159 - 1318825-1319618,1319722-1319854 29 5.2
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255 29 5.2
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 28 9.1
08_02_0180 + 13912769-13913008,13914723-13915006,13915118-139152... 28 9.1
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 28 9.1
>02_01_0312 -
2082614-2082677,2082815-2082945,2083041-2083129,
2083223-2083292,2083429-2083509,2083768-2083821,
2084864-2085067,2086272-2086366,2086976-2086997,
2087492-2087585,2087677-2087764,2087874-2087979,
2088103-2088189,2088261-2088309,2088418-2088521,
2088605-2088697,2088900-2088974,2089316-2089384,
2090182-2090250,2090339-2090374,2090471-2090565,
2090836-2090911,2091067-2091153,2091287-2091355,
2091654-2091731,2091836-2091925,2092436-2092642,
2092736-2092879
Length = 841
Score = 83.8 bits (198), Expect = 1e-16
Identities = 52/101 (51%), Positives = 65/101 (64%), Gaps = 3/101 (2%)
Frame = +3
Query: 3 IIVSELLGSWGDNELSPECLDGASNLLKPGGISIPSSYRSYVAPITSPRLWAAAKIATSG 182
I+VSELLGS+GDNELSPECLDGA LKP GISIPSSY S++ PIT+ +L +
Sbjct: 395 ILVSELLGSFGDNELSPECLDGAQRFLKPDGISIPSSYTSFIEPITASKL-------HND 447
Query: 183 IPQQKD-KNLETLWVVYMQNKHDIAKQS-SSSRLTI-HPKP 296
I KD + ET +VV + H IA+ + + S T HP P
Sbjct: 448 IKAHKDIAHFETAYVVKL---HRIARLAPTQSVFTFDHPNP 485
Score = 64.5 bits (150), Expect = 9e-11
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +2
Query: 257 TKLVFTFNHPSKAVKDEEGCDKSDYRGLPLTNNRRQATLTWDVQQDN---IMHGFGGYFD 427
T+ VFTF+HP+ + P +N+R L +++ Q+ ++HGF GYFD
Sbjct: 474 TQSVFTFDHPNPS---------------PNASNQRYTKLKFEIPQETGSCLVHGFAGYFD 518
Query: 428 CTLYGNEMISIVPGTHSPGMISWFPVFFQLR 520
LY + + I P T +P M SWFP+FF LR
Sbjct: 519 AVLYKDVHLGIEPNTATPNMFSWFPIFFPLR 549
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 32.3 bits (70), Expect = 0.42
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 IIVSELLGSWGDNE-LSPECLDGASNLLKPGGISIPSSYRSYVAPITS 143
+I+SE +G E + P L LKPGG+ +PS ++APIT+
Sbjct: 152 VIISEWMGYMLLYESMLPSVLFARDKWLKPGGLILPSHATLFMAPITN 199
>06_01_0134 - 1029149-1029632,1029766-1029821,1030725-1030727
Length = 180
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +3
Query: 153 WAAAKIATSGIPQQKDKNLETLWVVYMQNKHDIAKQSSSSRLTIHPKP*RMKRDVINQI 329
W+ K+ T I +K T+W+ Q +HD+ K+S++ H RDV NQ+
Sbjct: 7 WSPTKLKTEKIGLRKSS---TIWIKKKQIEHDLEKKSANRTHLAHNHFSFSLRDVANQL 62
>10_08_0815 +
20782834-20782996,20783062-20783144,20783227-20783268,
20783426-20783467,20783805-20783888,20784065-20784152,
20784276-20784373,20785475-20785519,20785622-20785698,
20785917-20786001,20786346-20786486
Length = 315
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -1
Query: 189 GEFLKLLFSRQPITWETLW-VQHTIDMSLESI 97
GEFLK++ + +T +TLW HT S+E++
Sbjct: 106 GEFLKVIHCTEEMTKQTLWDAMHTEQPSIEAV 137
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +3
Query: 81 LKPGGISIPSSYRSYVAPITS 143
LKPGG+ +PS Y+APIT+
Sbjct: 187 LKPGGLILPSHASLYLAPITN 207
>11_01_0159 - 1318825-1319618,1319722-1319854
Length = 308
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 153 WAAAKIATSGIPQQKDKNLETLWVVYMQNKHDIAKQSSSSRLTIHP 290
WAA S +PQ+ D +++ W +++ K A S+S+ HP
Sbjct: 89 WAAI---ASYLPQRTDNDIKNYWNTHLKKKLAAAANSTSAASNRHP 131
>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
Length = 965
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/23 (60%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = -2
Query: 653 RPLALCSGV--DRLPTSTTHSYH 591
R L LC V DRLPTST H +H
Sbjct: 80 RALDLCFAVALDRLPTSTEHQHH 102
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 45 LSPECLDGASNLLKPGGISIPSS 113
L E LD AS L+KPGGI + S+
Sbjct: 522 LQDELLDSASMLVKPGGILVYST 544
>08_02_0180 +
13912769-13913008,13914723-13915006,13915118-13915214,
13915358-13915393,13916665-13916810,13917002-13917107,
13917358-13917417,13917787-13917876
Length = 352
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 65 WSIESFKTRRNIDSKLISIVCCTHNVSQVMGC 160
WS E R N L+ + C +NV ++M C
Sbjct: 145 WSSEEINNRANEYWPLVMDIACKNNVKRIMRC 176
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 IIVSELLGSWGDNE-LSPECLDGASNLLKPGGISIPSSYRSYVAPITS 143
+I+SE +G + E + + LKP G+ PS R ++API S
Sbjct: 136 VIISEWMGYFLLRESMFDSVICARDRWLKPDGVMYPSHARMWLAPIRS 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,104,111
Number of Sequences: 37544
Number of extensions: 509549
Number of successful extensions: 1322
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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