Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30054
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0593 + 24177897-24178182,24178442-24178509,24178617-241788...    31   0.93 
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784...    31   1.2  
03_01_0110 - 865605-866004,866094-866712,867659-867863                 30   2.1  
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890...    28   6.5  

>02_04_0593 +
           24177897-24178182,24178442-24178509,24178617-24178840,
           24179221-24179304,24180183-24180396,24181242-24181418,
           24181507-24181626,24181854-24181998,24182055-24182065,
           24182222-24182314
          Length = 473

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 336 NPQKSYDYFSEVLQLIHGFVVRLNF-HFNIK 425
           N Q  YD FS  L+ +H  +VRL F H+++K
Sbjct: 274 NEQLRYDKFSNFLKQLHDEIVRLEFSHYDVK 304


>03_06_0074 -
           31476094-31476215,31477803-31478238,31478438-31478485,
           31478569-31479018,31479567-31479681,31480052-31480905
          Length = 674

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
 Frame = +3

Query: 240 YVVVKVKNILSVCC-LVMRMFLILLVLNDRFYSNPQKS--------YDYFSEVLQLIHGF 392
           + V K +N L  C  +V  +  ++ + ND+ YSN  +S        YDY   V   IH  
Sbjct: 418 HTVSKFENRLEECSRMVGELEQLIQIKNDKNYSNAFESLSTVVPNVYDYLIHVATQIHSE 477

Query: 393 VVRLNFHFNIKKI 431
           VV+  F   + K+
Sbjct: 478 VVQFKFVIKVVKV 490


>03_01_0110 - 865605-866004,866094-866712,867659-867863
          Length = 407

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +3

Query: 207 MGMISLDLKHIYVVVKVKNILSVCCLVMRMFLILLVLNDRFYSN 338
           MG I     H+ V+V+V++ LSV      + L+ L  ND F+ N
Sbjct: 269 MGYILSSSIHVEVIVRVEHRLSVRLWSAGILLVFLRFNDDFHGN 312


>06_03_1384 +
           29786028-29786657,29788581-29788711,29788987-29789028,
           29789383-29789441,29789774-29790070,29790180-29790289,
           29790966-29791070,29791201-29791263,29791766-29791933,
           29792111-29792248
          Length = 580

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 5/39 (12%)
 Frame = +3

Query: 114 CKIGLCVIIF-----GGKVLDGLIARSDNSALRCCDMGM 215
           C+ GL V I      GG++LD ++AR +N+ ++  D G+
Sbjct: 243 CEDGLNVYIVMELCEGGELLDRILARDENAPMKLIDFGL 281


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,949
Number of Sequences: 37544
Number of extensions: 273511
Number of successful extensions: 469
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)