Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30052
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0146 + 4953007-4953297,4954105-4954341,4954592-4954669,495...    28   9.1  
02_04_0195 + 20830849-20830950,20831498-20831690,20831800-208319...    28   9.1  

>09_02_0146 +
           4953007-4953297,4954105-4954341,4954592-4954669,
           4954991-4955167,4955705-4955761,4955988-4956174,
           4956910-4957055,4957213-4957395,4957860-4957970,
           4959386-4959505,4959596-4959740,4960001-4960164,
           4960816-4960902,4961062-4961390,4963426-4963507,
           4963616-4963746,4963976-4964225,4965112-4965393,
           4966780-4966986
          Length = 1087

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 222 KRWINMKMLGINKNNNFVFPLMCPPSDG 305
           +RW+++K LG N   +FVF     P  G
Sbjct: 383 RRWLDIKKLGSNGKGHFVFVSNLSPCSG 410


>02_04_0195 +
           20830849-20830950,20831498-20831690,20831800-20831904,
           20832147-20832235,20832316-20832468,20832628-20832762,
           20832849-20833015,20833519-20833613,20833707-20834080,
           20834177-20834599
          Length = 611

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -1

Query: 142 TNEQQFIFIYNNLILAYRGFSLIQFSLTQ 56
           ++ + F+F + N+++ Y G  +I  +LTQ
Sbjct: 143 SDNKYFLFTHKNIVIRYNGNQIIHVNLTQ 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,293,183
Number of Sequences: 37544
Number of extensions: 321653
Number of successful extensions: 634
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)