Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30049X
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 145 2e-35
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 145 2e-35
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 145 2e-35
11_06_0087 - 19919224-19922304 33 0.19
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.58
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 2.4
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 3.1
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 4.1
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 7.2
04_03_1015 - 21734381-21736534 27 7.2
08_01_0220 - 1751367-1752854 27 9.5
07_03_0183 - 14822973-14823139,14823232-14823627,14823861-148240... 27 9.5
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 9.5
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 145 bits (351), Expect = 2e-35
Identities = 64/89 (71%), Positives = 74/89 (83%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV+ I+
Sbjct: 22 KKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVISIL 81
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDVSQLRR 269
QR + VDGKVRTD TYPAGFMDV + +
Sbjct: 82 MQRHVMVDGKVRTDKTYPAGFMDVVSIAK 110
Score = 126 bits (303), Expect = 1e-29
Identities = 56/91 (61%), Positives = 70/91 (76%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
SI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G K +P+L T+DGRTIRYP
Sbjct: 107 SIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQKGIPFLNTNDGRTIRYP 166
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLGTCV 529
DPLIK ND+I++D+ T KI+DFIK +G V
Sbjct: 167 DPLIKANDTIKIDLETNKIVDFIKFDVGNIV 197
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 145 bits (351), Expect = 2e-35
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDV 254
QR + VDGKVRTD TYPAGFMDV
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDV 89
Score = 122 bits (294), Expect = 2e-28
Identities = 53/91 (58%), Positives = 69/91 (75%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLGTCV 529
DP+IK ND+I++D+ T KI+DFIK +G V
Sbjct: 151 DPIIKANDTIKIDLETNKIVDFIKFDVGNVV 181
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 145 bits (351), Expect = 2e-35
Identities = 64/84 (76%), Positives = 73/84 (86%)
Frame = +3
Query: 3 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 182
KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT EV+ I+
Sbjct: 6 KKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISIL 65
Query: 183 KQRLIKVDGKVRTDTTYPAGFMDV 254
QR + VDGKVRTD TYPAGFMDV
Sbjct: 66 MQRHVLVDGKVRTDKTYPAGFMDV 89
Score = 123 bits (296), Expect = 1e-28
Identities = 54/91 (59%), Positives = 69/91 (75%)
Frame = +2
Query: 257 SIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYP 436
SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G K +PYL T+DGRTIRYP
Sbjct: 91 SIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYP 150
Query: 437 DPLIKVNDSIQLDIATTKIMDFIKLSLGTCV 529
DPLIK ND+I++D+ T KI+DFIK +G V
Sbjct: 151 DPLIKANDTIKIDLETNKIVDFIKFDVGNVV 181
>11_06_0087 - 19919224-19922304
Length = 1026
Score = 32.7 bits (71), Expect = 0.19
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +3
Query: 381 DLRMFRTW*RMMAA-PSATQTHLSKSTIPSS*TSQLRRL 494
DL R W +A PS T HLS ++PSS T Q RRL
Sbjct: 208 DLSSARDWPLAIAMLPSLTALHLSSCSLPSSSTQQWRRL 246
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.58
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 132 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 31
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 145 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 17
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +2
Query: 29 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 193
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 281 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 385
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 177 FSGLRFRSKHTSDDSSGKSPGASTRATCG 91
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>04_03_1015 - 21734381-21736534
Length = 717
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 345 STSCVKSSVWRPDLRMFRTW*RMMAAPSATQTHLSKSTIPSS 470
S+S V S+V+ LR+ T R +AA THL+ ST PS+
Sbjct: 38 SSSQVPSAVYASLLRL-ATSHRSLAAARRIATHLASSTAPST 78
>08_01_0220 - 1751367-1752854
Length = 495
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Frame = +2
Query: 335 EEAKYKLCKVKRVATGPKNVPY-----------LVTHDGRTIRYPDPLIKVNDSIQLD-- 475
+ A K+C+ + V + P+ P L+ HDGR + PDPL + ++ L
Sbjct: 190 QPAFMKICQERHVVSTPEKAPAAPLPRSEYLRPLIFHDGRLVGRPDPLACLAVALWLPLG 249
Query: 476 --IATTKIM-DFIKLSLG 520
+A T+I+ F+ S+G
Sbjct: 250 AALAVTRILIAFLPYSVG 267
>07_03_0183 -
14822973-14823139,14823232-14823627,14823861-14824005,
14824174-14824380
Length = 304
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -1
Query: 145 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIH 38
++RF+ K G W + G Y P +NIH
Sbjct: 64 WQRFVVKGISGFEKNRFWEDISGASIYKKPRTNNIH 99
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 93 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDTTY 233
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,932,659
Number of Sequences: 37544
Number of extensions: 339875
Number of successful extensions: 1021
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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