Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30048
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,608... 36 0.039
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 32 0.48
03_06_0422 + 33818887-33819996 31 0.84
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 30 1.5
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 30 1.9
08_02_1097 + 24284494-24284496,24284946-24285407,24285476-242864... 29 2.6
07_03_0318 - 16721615-16722154 29 2.6
07_03_1191 + 24690936-24691029,24691184-24691377 29 3.4
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 3.4
10_08_0777 + 20489528-20490649 29 4.5
08_02_1056 + 23991894-23992028,23992139-23992258,23993366-239934... 29 4.5
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 29 4.5
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 5.9
11_01_0176 - 1403284-1403553,1404313-1404468,1404569-1404787,140... 28 5.9
09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779 28 5.9
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 28 5.9
08_02_1172 + 24898290-24899141,24900864-24901328 28 7.8
03_05_0292 + 22846273-22846377,22847161-22847823 28 7.8
02_01_0775 + 5775949-5777385 28 7.8
>02_02_0011 + 6083431-6085541,6086659-6086779,6087188-6087247,
6087354-6088391,6089733-6089925,6090326-6090375,
6090470-6090744,6091114-6091180,6091189-6091278,
6091301-6091381,6091435-6091593
Length = 1414
Score = 35.5 bits (78), Expect = 0.039
Identities = 25/84 (29%), Positives = 34/84 (40%)
Frame = -3
Query: 294 PKTVPIPAPEPATPLSLHQHQ*IWQQSQCP**PMWSGRTALQRAV*GQQVPSVYGWVLLQ 115
P T P P P P SL Q +Q Q ++ + ALQ + +P Y L+
Sbjct: 989 PPTPQQPLPPPPPPPSLQQLHHPYQHQQQQQQQLYHHQNALQPQIPSNSIPQAY----LR 1044
Query: 114 VVAPVQSCRRWQTWLQGRSVWRQT 43
P+Q Q LQ W+QT
Sbjct: 1045 TQQPLQQLPLMQQQLQPAQAWQQT 1068
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.9 bits (69), Expect = 0.48
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 44 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDGTCCPYTALC 172
VC T++P +QVC+ +C G CS+ + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>03_06_0422 + 33818887-33819996
Length = 369
Score = 31.1 bits (67), Expect = 0.84
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = -2
Query: 430 ESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 260
E ++ER + E+T SL + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 44 VCRQTDRPCSQVCHLLQLCTGATTCSSTHPYTDG 145
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/73 (28%), Positives = 31/73 (42%)
Frame = -1
Query: 269 RNQLLHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYCCKWSHQCRVA 90
R +++ C S S +N+++ RCG HC L + L + H +
Sbjct: 5 RTKVISCMQVSVPG-NSMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQ 59
Query: 89 EDGRPGCRGDQSG 51
E G GC DQSG
Sbjct: 60 ESGLSGCFRDQSG 72
>08_02_1097 +
24284494-24284496,24284946-24285407,24285476-24286450,
24286566-24286655,24286760-24287021,24287447-24287472
Length = 605
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/51 (29%), Positives = 20/51 (39%)
Frame = +1
Query: 175 CGPSRPHRSLRTLTLLPNSLVLVQRQWSSWFRSWYWNSLRLPHHRLCQEPL 327
C + LR + P R W + WY + R HRL +EPL
Sbjct: 540 CEYAHSQDELRVIDARPKYRTEPCRYWLAGKGCWYGDKCRYKQHRLAREPL 590
>07_03_0318 - 16721615-16722154
Length = 179
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = -2
Query: 256 STVAAPAPMNLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTSA 98
+T APAP A + L T A GTA + GTAA+ T+A
Sbjct: 102 ATAGAPAPAGTADKVAPLGTPAPAVSPAAAGTAGTAASAVATAGTAAAAGTAA 154
>07_03_1191 + 24690936-24691029,24691184-24691377
Length = 95
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 44 VCRQTDRPCSQV-CHLLQLCTGATTCSSTHPYTDGTCC 154
VC++T+ C+Q CH + L G T S + D CC
Sbjct: 38 VCQKTEYGCTQEKCHQMCLGDGRTVASQYCRHYDTQCC 75
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +1
Query: 46 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 219
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 220 LPNS 231
+PN+
Sbjct: 239 MPNA 242
>10_08_0777 + 20489528-20490649
Length = 373
Score = 28.7 bits (61), Expect = 4.5
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = +2
Query: 161 TALCSAVLPDHIGH*GH*LCC-QIHWCWCSDSGVAGSGA-GIGTVFGSLIIGYARNPSLK 334
TALC +V G +C ++ + SG+ G+ IGT SL G A + ++K
Sbjct: 85 TALCESVPASTCS--GDGVCSYEVETMFGDTSGIGGTDTFAIGTATASLAFGCAMDSNIK 142
Query: 335 QQLFSYAILG 364
Q L + ++G
Sbjct: 143 QLLGASGVVG 152
>08_02_1056 +
23991894-23992028,23992139-23992258,23993366-23993434,
23993568-23993648
Length = 134
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -1
Query: 557 SPCITMRVRFPNIRFHAVHSR 495
SPC+ ++V F ++RFHA +R
Sbjct: 79 SPCVAVQVSFVHLRFHARENR 99
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/76 (21%), Positives = 30/76 (39%)
Frame = -2
Query: 478 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHSLRQGETQNGV*EQLLLEGGVPGIADDE 299
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 298 GAEDCSNTSSGTSYST 251
GAE S+ + +T
Sbjct: 391 GAESVSSNARAQPTTT 406
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 439 NSLESEEQQERHHKTEQTHSLRQ 371
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>11_01_0176 -
1403284-1403553,1404313-1404468,1404569-1404787,
1405198-1405440,1405539-1405695,1406186-1406226
Length = 361
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 257 LHCRCTSTNEFGSRVN-VLSDRCGLEGPHCREL 162
L+CR +S N+F RV+ +L CG G H + +
Sbjct: 122 LNCRISSGNKFIKRVDAILEKHCGTMGCHLQRM 154
>09_02_0326 + 7279991-7280053,7280239-7280422,7280706-7280779
Length = 106
Score = 28.3 bits (60), Expect = 5.9
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -3
Query: 309 PMMREPKTVPIPAPEPATP 253
P ++E KT+P+PAP A P
Sbjct: 84 PQVKEKKTLPLPAPAAAPP 102
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 198 PMWSGRTALQRAV*GQQVPSVYGWVLLQVVAPVQSCRRWQTWLQGRSVW 52
P+W G ++ AV G + P+ +G+ ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>08_02_1172 + 24898290-24899141,24900864-24901328
Length = 438
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 46 LPPD*SPLQPGLPSSATLHWCDHLQQYPPIHRWYLLSLHSSLQCGPSRPHR-SLRTLTLL 222
LPP + L P H QYPP ++ +H Q PS P R +L L+L
Sbjct: 40 LPPPYAALYPTAGGVGVGVGAHHHHQYPPAAFFHPPPVHQQHQAPPSPPLREALPLLSLS 99
Query: 223 P 225
P
Sbjct: 100 P 100
>03_05_0292 + 22846273-22846377,22847161-22847823
Length = 255
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 235 VLVQRQWSSWFRSWYWNSLRLPHHRLC 315
VLV + SW R W W R R+C
Sbjct: 152 VLVDERRRSWRRQWSWRRRRRRRSRMC 178
>02_01_0775 + 5775949-5777385
Length = 478
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -1
Query: 131 GGYCCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 15
GG +W Q RV G GC G + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,801,509
Number of Sequences: 37544
Number of extensions: 469028
Number of successful extensions: 1969
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1962
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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